Basic Information
Locus ID:
Ag10G00712
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein phosphatase 2C
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 132186280 | 132190375 | - | Ag10G00712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 39,501.47 Da | 34.32 | 115.26 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 71 | 351 | 1.90108E-60 | IPR001932 |
| Pfam | PF00481 | Protein phosphatase 2C | 68 | 343 | 6.3E-48 | IPR001932 |
| SUPERFAMILY | SSF81606 | PP2C-like | 71 | 351 | 5.36E-54 | IPR036457 |
| Gene3D | G3DSA:3.60.40.10 | - | 54 | 358 | 3.5E-67 | IPR036457 |
| SMART | SM00332 | PP2C_4 | 31 | 349 | 3.0E-51 | IPR001932 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 50 | 351 | 40.669235 | IPR001932 |
| ProSitePatterns | PS01032 | PPM-type phosphatase domain signature. | 73 | 81 | - | IPR000222 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63340.12 | - | 0 |
| RefSeq | XP_017238723.1 | PREDICTED: probable protein phosphatase 2C 51 [Daucus carota subsp. sativus] | 0 |
| A3CCP9 | Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0586001 PE=3 SV=2 | 0 | |
| TrEMBL | A0A166CGG2 | protein-serine/threonine phosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012504 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.315239 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.928032 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.953417 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.111572 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.831564 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.834131 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.507313 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.228296 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.711834 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.743071 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.271189 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.225393 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.92039 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.749161 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.308517 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.524868 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.735426 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.322997 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.284046 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.651239 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.763893 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.601274 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.869432 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.56399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.841677 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.394738 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.870921 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.578632 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.852951 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.981592 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.062817 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 18.209679 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.276712 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.289869 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.440569 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.811357 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.522047 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.149355 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.656097 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.246839 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.288305 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.766903 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.753265 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 50.313511 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.991497 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.632427 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.722532 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.85191 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.152327 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 34.272854 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35350, jg8759 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13535, gene_19362 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000315, Ah000316 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g119940, BVRB_5g119960 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg31680, Sbi_jg31682, Sbi_jg57618, Sbi_jg57619 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25311, Seu_jg25312 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00025823, GOSA_00025824, GOSA_00025825 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl54248, Sgl54249, Sgl54250, Sgl59594, Sgl59595 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004831, gene:ENSEOMG00000005668 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0025280, CQ.Regalona.r1.5AG0025290 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026640 |
| Apiaceae | Apium graveolens | 2 | Ag10G00711, Ag10G00712 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G000930, scaffold000566G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718236 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2916.V1.1, AsparagusV1_08.430.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G03474, Ftri10G30544, Ftri10G33054 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G63320.1, AT3G63340.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005760m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g00200.v2.2, Sp5g00210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g061060.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0369, Ceq06G2067 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G0474, Cgl06G2182, Cgl06G2183, Cgl06G2184 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01030 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1136, evm.TU.LG04.1137 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024709 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10329 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1780, BH04.1811, CH04.2043 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684000, gene-QOZ80_9BG0709990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0723360.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066418 |
| Poaceae | Oryza coarctata | 1 | Oco21G007760 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52810.3, LOC_Os11g37540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G184500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103179 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G015670, Chr31G007220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G667400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG054870, gene_TRIDC7BG047620 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G395000.1, TraesCS7B02G297000.2 ... |
| Poaceae | Zea mays | 5 | Zm00001eb114480_P001, Zm00001eb114500_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-46177, nbis-gene-46178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19008 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2843, evm.TU.LG01.2845 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1031 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11321 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10701 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.331 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013893 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9957 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19738, nbisL1-mrna-24777 |
| Salicaceae | Populus euphratica | 2 | populus_peu15093, populus_peu15094 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132607989, gene-LOC132610787, gene-LOC132620401 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002232500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107022517, gene-LOC107022754, gene-LOC107031575 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17359, gene_6380 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0814, TC07G2634 |
| Zosteraceae | Zostera marina | 1 | Zosma06g26550.v3.1 |