halophFGD

Basic Information

Locus ID: Ag10G00711

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: phosphatase 2C

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	132124287	132138908	+	Ag10G00711

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.54	121,007.72 Da	48.29	81.20	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00143	PP2Cc	67	427	2.168E-54	IPR001932
Pfam	PF00069	Protein kinase domain	806	1059	2.1E-25	IPR000719
Pfam	PF00481	Protein phosphatase 2C	190	241	1.7E-7	IPR001932
Pfam	PF00481	Protein phosphatase 2C	290	420	1.6E-26	IPR001932
SUPERFAMILY	SSF81606	PP2C-like	60	428	2.44E-55	IPR036457
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	580	1062	1.33E-35	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	802	1060	2.8E-35	-
Gene3D	G3DSA:3.60.40.10	-	62	431	2.2E-71	IPR036457
SMART	SM00220	serkin_6	588	1059	2.6E-12	IPR000719
SMART	SM00332	PP2C_4	57	425	4.0E-48	IPR001932
ProSiteProfiles	PS51746	PPM-type phosphatase domain profile.	66	427	43.001938	IPR001932
ProSiteProfiles	PS50011	Protein kinase domain profile.	588	1059	26.025654	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	834	846	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K17505 (protein phosphatase 1K [EC:3.1.3.16])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G63340.1	Protein phosphatase 2C family protein.
RefSeq	XP_017242951.1	PREDICTED: uncharacterized protein LOC108215111 [Daucus carota subsp. sativus]
Swiss-Prot	Q8RXY0	Probable inactive protein kinase At3g63330 OS=Arabidopsis thaliana OX=3702 GN=At3g63330 PE=2 SV=1
TrEMBL	A0A5B7BCZ2	PPM-type phosphatase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_035856 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.775183	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.463877	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	9.78548	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.174566	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.007335	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.066947	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.605754	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	11.081182	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	16.256493	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.713625	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.127823	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	16.608496	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.092821	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.784608	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.048635	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.972086	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.383899	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.605235	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.897498	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.49493	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.068645	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.193854	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.557103	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	10.850078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.951597	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.853949	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.530754	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.808275	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.499082	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.712442		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.792114		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.754735		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.185138		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.035148		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.401392		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.129632		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.11901		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.013082		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.768274	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.907792	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.047771	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.958223	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.594881	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.757809	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.960871	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.900748	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.133604	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.742685	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	24.467533	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	25.406652	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35350, jg8759
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13535, gene_19362
Amaranthaceae	Atriplex hortensis	2	Ah000315, Ah000316
Amaranthaceae	Beta vulgaris	2	BVRB_5g119940, BVRB_5g119960
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg31680, Sbi_jg31682, Sbi_jg57618, Sbi_jg57619 ... Sbi_jg57620, Sbi_jg57621
Amaranthaceae	Salicornia europaea	2	Seu_jg25311, Seu_jg25312
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00025823, GOSA_00025824, GOSA_00025825
Amaranthaceae	Suaeda glauca	5	Sgl54248, Sgl54249, Sgl54250, Sgl59594, Sgl59595
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000004831, gene:ENSEOMG00000005668 ... gene:ENSEOMG00000022169, gene:ENSEOMG00000023462, gene:ENSEOMG00000026089
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.5AG0025280, CQ.Regalona.r1.5AG0025290 ... CQ.Regalona.r1.5BG0026830, CQ.Regalona.r1.5BG0026840, CQ.Regalona.r1.9AG0005590
Anacardiaceae	Pistacia vera	1	pistato.v30026640
Apiaceae	Apium graveolens	2	Ag10G00711, Ag10G00712
Arecaceae	Cocos nucifera	2	COCNU_08G000930, scaffold000566G000060
Arecaceae	Phoenix dactylifera	1	gene-LOC103718236
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2916.V1.1, AsparagusV1_08.430.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G03474, Ftri10G30544, Ftri10G33054
Brassicaceae	Arabidopsis thaliana	2	AT3G63320.1, AT3G63340.2
Brassicaceae	Eutrema salsugineum	1	Thhalv10005760m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g00200.v2.2, Sp5g00210.v2.2
Brassicaceae	Brassica nigra	1	BniB06g061060.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G0369, Ceq06G2067
Casuarinaceae	Casuarina glauca	4	Cgl04G0474, Cgl06G2182, Cgl06G2183, Cgl06G2184
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g01030
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1136, evm.TU.LG04.1137
Plantaginaceae	Plantago ovata	1	Pov_00024709
Plumbaginaceae	Limonium bicolor	1	Lb2G10329
Poaceae	Echinochloa crus-galli	3	AH04.1780, BH04.1811, CH04.2043
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_9AG0684000, gene-QOZ80_9BG0709990
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0723360.1
Poaceae	Lolium multiflorum	1	gene-QYE76_066418
Poaceae	Oryza coarctata	1	Oco21G007760
Poaceae	Oryza sativa	2	LOC_Os01g52810.3, LOC_Os11g37540.1
Poaceae	Paspalum vaginatum	1	gene-BS78_05G184500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0103179
Poaceae	Sporobolus alterniflorus	2	Chr07G015670, Chr31G007220
Poaceae	Thinopyrum elongatum	1	Tel7E01G667400
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG054870, gene_TRIDC7BG047620
Poaceae	Triticum aestivum	3	TraesCS7A02G395000.1, TraesCS7B02G297000.2 ... TraesCS7D02G390600.1
Poaceae	Zea mays	5	Zm00001eb114480_P001, Zm00001eb114500_P001 ... Zm00001eb114510_P001, Zm00001eb114650_P001, Zm00001eb114680_P001
Poaceae	Zoysia japonica	2	nbis-gene-46177, nbis-gene-46178
Poaceae	Zoysia macrostachya	1	Zma_g19008
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2843, evm.TU.LG01.2845
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02190
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_5_RagTag.1031
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-11321
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-10701
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000006l.331
Rhizophoraceae	Kandelia obovata	1	Maker00013893
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9957
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19738, nbisL1-mrna-24777
Salicaceae	Populus euphratica	2	populus_peu15093, populus_peu15094
Solanaceae	Lycium barbarum	5	gene-LOC132607989, gene-LOC132610787, gene-LOC132620401 ... gene-LOC132624654, gene-LOC132626561
Solanaceae	Solanum chilense	1	SOLCI002232500
Solanaceae	Solanum pennellii	3	gene-LOC107022517, gene-LOC107022754, gene-LOC107031575
Tamaricaceae	Reaumuria soongarica	2	gene_17359, gene_6380
Tamaricaceae	Tamarix chinensis	2	TC01G0814, TC07G2634
Zosteraceae	Zostera marina	1	Zosma06g26550.v3.1