halophFGD

Basic Information

Locus ID: Ag10G00701

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	131341339	131344214	-	Ag10G00701

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.26	29,114.05 Da	36.16	74.32	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	18	257	9.1E-81	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	147	247	1.18E-21	-
Gene3D	G3DSA:3.10.20.90	-	143	259	9.7E-43	-
ProSiteProfiles	PS51745	PB1 domain profile.	148	248	23.572983	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G04730.1	indoleacetic acid-induced protein 16. early auxin-induced (IAA16)
RefSeq	XP_017237522.1	PREDICTED: auxin-responsive protein IAA16-like [Daucus carota subsp. sativus]
Swiss-Prot	O24407	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1
TrEMBL	A0A166CGX0	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012517 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.343518	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.19969	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.006352	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.927607	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.245791	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.598287	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.439316	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	93.964432	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	91.401711	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	89.608879	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	87.911018	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	110.407356	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	119.246178	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1639.813232	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1320.431885	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1311.103271	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1425.288696	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1279.774414	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1563.415771	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1147.967407	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1621.266846	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2194.626465	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1411.012695	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1406.978149	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	916.694702	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1420.843384	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	707.433411	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1094.817749	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	34.591503		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	82.229568		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	79.944283		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	24.708397		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	19.17771		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.870986		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.665616		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	21.841145		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.758886		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	144.332779	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	115.869377	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	48.741428	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	235.506989	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	978.184448	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	363.441467	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	572.610413	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	117.170708	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1243.241699	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	157.625473	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	114.192604	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	68.124969	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11124, jg12644, jg27827, jg35374, jg37839
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10080, gene_13522, gene_26164
Amaranthaceae	Atriplex hortensis	5	Ah000272, Ah002353, Ah006130, Ah010686, Ah010689
Amaranthaceae	Beta vulgaris	3	BVRB_4g082260, BVRB_5g120320, BVRB_9g220380
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11486, Sbi_jg16808, Sbi_jg31549, Sbi_jg46417 ... Sbi_jg57732, Sbi_jg61331
Amaranthaceae	Salicornia europaea	3	Seu_jg20737, Seu_jg23056, Seu_jg25378
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005252, GOSA_00008210, GOSA_00019482
Amaranthaceae	Suaeda glauca	6	Sgl24837, Sgl29983, Sgl54307, Sgl55866, Sgl59651, Sgl61177
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000007236, gene:ENSEOMG00000009301 ... gene:ENSEOMG00000016268, gene:ENSEOMG00000022044, gene:ENSEOMG00000026426, gene:ENSEOMG00000028312, gene:ENSEOMG00000038928, gene:ENSEOMG00000041243, gene:ENSEOMG00000052305
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0010570, CQ.Regalona.r1.4BG0010780 ... CQ.Regalona.r1.5AG0025620, CQ.Regalona.r1.5BG0027140, CQ.Regalona.r1.7BG0010680, CQ.Regalona.r1.9AG0013930
Anacardiaceae	Pistacia vera	4	pistato.v30026330, pistato.v30126730, pistato.v30184390 ... pistato.v30235710
Apiaceae	Apium graveolens	6	Ag10G00701, Ag1G01812, Ag2G02343, Ag6G01457, Ag8G01539 ... Ag9G01735
Arecaceae	Cocos nucifera	5	COCNU_03G001830, COCNU_06G000680, COCNU_06G015060 ... COCNU_14G000940, COCNU_14G011810
Arecaceae	Phoenix dactylifera	4	gene-LOC103705980, gene-LOC103721655, gene-LOC103722711 ... gene-LOC120105940
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.3214.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G31326, Ftri9G33260, FtriNA08258
Brassicaceae	Arabidopsis thaliana	4	AT1G04250.1, AT3G04730.1, AT3G23050.1, AT4G14550.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10008679m.g.v1.0, Thhalv10021428m.g.v1.0 ... Thhalv10021441m.g.v1.0, Thhalv10026031m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g03060.v2.2, Sp3g03580.v2.2, Sp3g20720.v2.2 ... Sp7g12640.v2.2
Brassicaceae	Brassica nigra	9	BniB01g039200.2N, BniB01g058840.2N, BniB02g001610.2N ... BniB03g000750.2N, BniB03g024990.2N, BniB06g046620.2N, BniB07g020120.2N, BniB07g048860.2N, BniB07g062090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq06G0708, Ceq06G1393, Ceq06G2378, Ceq07G0381
Casuarinaceae	Casuarina glauca	4	Cgl06G0730, Cgl06G1456, Cgl06G2502, Cgl07G0393
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g01280, gene.Cymno06g02130, gene.Cymno06g12860
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g40890, gene.Thate02g40990
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5002, nbisL1-mrna-6331, nbisL1-mrna-6333 ... nbisL1-mrna-7868
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2256, evm.TU.LG04.1192, evm.TU.LG11.907
Plantaginaceae	Plantago ovata	3	Pov_00007915, Pov_00018007, Pov_00024671
Plumbaginaceae	Limonium bicolor	5	Lb1G06946, Lb1G07951, Lb2G10315, Lb3G18377, Lb3G18983
Poaceae	Echinochloa crus-galli	16	AH01.1210, AH05.3968, AH05.581, AH06.1662, BH01.1513 ... BH01.789, BH05.4060, BH05.628, BH06.1603, CH01.1438, CH01.785, CH01.787, CH05.4270, CH05.724, CH06.1760, Contig309.126
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0000810, gene-QOZ80_3AG0216690 ... gene-QOZ80_3AG0225050, gene-QOZ80_3BG0261960, gene-QOZ80_3BG0270310, gene-QOZ80_5AG0396890, gene-QOZ80_5AG0400970, gene-QOZ80_5BG0445380, gene-QOZ80_5BG0449560, gene-QOZ80_6AG0530850, gene-QOZ80_6BG0484690
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.5HG0433470.1, HORVU.MOREX.r3.5HG0509120.1 ... HORVU.MOREX.r3.5HG0509730.1, HORVU.MOREX.r3.5HG0509760.1, HORVU.MOREX.r3.7HG0711230.1
Poaceae	Lolium multiflorum	4	gene-QYE76_000687, gene-QYE76_010490, gene-QYE76_035400 ... gene-QYE76_062927
Poaceae	Oryza coarctata	7	Oco01G005800, Oco02G005890, Oco06G019310, Oco06G024120 ... Oco12G009730, Oco23G009900, Oco24G009580
Poaceae	Oryza sativa	6	LOC_Os01g13030.1, LOC_Os03g43400.1, LOC_Os03g53150.1 ... LOC_Os05g14180.1, LOC_Os06g22870.1, LOC_Os12g40890.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G085300, gene-BS78_01G148800, gene-BS78_K179600 ... gene-BS78_08G135700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100429, Pt_Chr0104448, Pt_Chr0107106, Pt_Chr0501467 ... Pt_Chr0704300
Poaceae	Sporobolus alterniflorus	12	Chr01G005580, Chr01G010970, Chr04G028360, Chr07G027310 ... Chr12G025960, Chr12G037930, Chr14G017350, Chr18G004990, Chr19G008040, Chr21G011790, Chr22G012400, Chr27G008620
Poaceae	Thinopyrum elongatum	5	Tel3E01G273600, Tel5E01G125800, Tel5E01G602200 ... Tel5E01G609500, Tel7E01G583200
Poaceae	Triticum dicoccoides	9	gene_TRIDC3AG020910, gene_TRIDC3BG031190 ... gene_TRIDC5AG008920, gene_TRIDC5AG055320, gene_TRIDC5AG055920, gene_TRIDC5BG009670, gene_TRIDC5BG059920, gene_TRIDC7AG047560, gene_TRIDC7BG040020
Poaceae	Triticum aestivum	15	TraesCS3A02G155200.1, TraesCS3B02G181500.1 ... TraesCS3D02G162700.1, TraesCS5A02G058600.1, TraesCS5A02G378300.2, TraesCS5A02G382600.1, TraesCS5B02G058500.1, TraesCS5B02G381900.1, TraesCS5B02G386800.1, TraesCS5D02G069300.1, TraesCS5D02G388300.2, TraesCS5D02G392000.1, TraesCS7A02G331100.1, TraesCS7B02G242800.1, TraesCS7D02G339300.1
Poaceae	Zea mays	4	Zm00001eb056870_P001, Zm00001eb135550_P001 ... Zm00001eb215120_P001, Zm00001eb350370_P005
Poaceae	Zoysia japonica	7	nbis-gene-15030, nbis-gene-16112, nbis-gene-24271 ... nbis-gene-35452, nbis-gene-44587, nbis-gene-47576, nbis-gene-47901
Poaceae	Zoysia macrostachya	8	Zma_g25292, Zma_g26085, Zma_g27888, Zma_g2824, Zma_g30120 ... Zma_g32319, Zma_g503, Zma_g9503
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2868, evm.TU.LG02.1145, evm.TU.LG07.1722 ... evm.TU.LG08.524, evm.TU.LG09.828, evm.TU.LG11.550, evm.TU.LG15.1484, evm.TU.LG16.1241, evm.TU.LG20.1258, evm.TU.LG22.1553
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02690
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_18_RagTag.468, evm.TU.Scaffold_1_RagTag.281 ... evm.TU.Scaffold_2_RagTag.1943, evm.TU.Scaffold_6_RagTag.817, evm.TU.Scaffold_9_RagTag.954
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1554, nbisL1-mrna-15869, nbisL1-mrna-21246 ... nbisL1-mrna-3360, nbisL1-mrna-7919
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10099, nbisL1-mrna-10705, nbisL1-mrna-18117 ... nbisL1-mrna-7608
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-13778, nbisL1-mrna-18353, nbisL1-mrna-5339 ... nbisL1-mrna-693, nbisL1-mrna-7892
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.493, evm.TU.utg000009l.124 ... evm.TU.utg000011l.505, evm.TU.utg000012l.190, evm.TU.utg000023l.172
Rhizophoraceae	Kandelia obovata	5	Maker00005777, Maker00007555, Maker00009251, Maker00011225 ... Maker00018742
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12914, nbisL1-mrna-1477, nbisL1-mrna-15255 ... nbisL1-mrna-7311, nbisL1-mrna-7770
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16248, nbisL1-mrna-256, nbisL1-mrna-4224 ... nbisL1-mrna-5093
Salicaceae	Populus euphratica	9	populus_peu02797, populus_peu02804, populus_peu07468 ... populus_peu13586, populus_peu15127, populus_peu15928, populus_peu21481, populus_peu32790, populus_peu33621
Solanaceae	Lycium barbarum	6	gene-LOC132598496, gene-LOC132605635, gene-LOC132610770 ... gene-LOC132633355, gene-LOC132642624, gene-LOC132645298
Solanaceae	Solanum chilense	3	SOLCI001357900, SOLCI001391400, SOLCI002322500
Solanaceae	Solanum pennellii	5	gene-LOC107008367, gene-LOC107012644, gene-LOC107021546 ... gene-LOC107022057, gene-LOC107031695
Tamaricaceae	Reaumuria soongarica	2	STRG.17638_chr09_-, STRG.28466_chr04_-
Tamaricaceae	Tamarix chinensis	4	TC02G3469, TC05G1184, TC07G2315, TC12G1301
Zosteraceae	Zostera marina	1	Zosma06g24040.v3.1