Basic Information
Locus ID:
Ag10G00698
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 131082194 | 131088113 | - | Ag10G00698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 45,894.21 Da | 54.19 | 76.50 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16525 | RING-HC_PCGF | 18 | 60 | 1.82927E-16 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | 5.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 84 | 6.85E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 112 | 3.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 59 | 1.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 60 | 11.943417 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 35 | 44 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 161 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.1 | DREB2A-interacting protein 2. Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. | 0 |
| RefSeq | XP_017238267.1 | PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Daucus carota subsp. sativus] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ANU5 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012519 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.060772 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.938432 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.452484 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.722412 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.458669 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.006914 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.548841 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.596238 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.659121 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.627241 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.925923 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.807142 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.487545 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.342803 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.700554 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.512632 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.551219 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.432257 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.778357 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.659703 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.674776 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.740763 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.094889 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.510496 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.740108 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.24734 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.388458 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.624451 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.752557 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.339233 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.228625 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.096875 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.022485 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.814407 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.668336 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.468726 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.70176 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.753657 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.870477 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.767253 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.340002 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.804066 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.214975 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.744823 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.108294 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.51422 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.36295 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.439013 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.75424 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.817907 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16168, jg35380, jg37837, jg8729 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10078 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006100 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g082200, BVRB_8g198440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16817, Sbi_jg61340 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg102 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008213 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24833, Sgl29979 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008677, gene:ENSEOMG00000009047 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010500, CQ.Regalona.r1.4BG0010680 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30026210, pistato.v30184230, pistato.v30235650 |
| Apiaceae | Apium graveolens | 2 | Ag10G00698, Ag6G02078 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G015090, COCNU_08G000170, COCNU_14G011850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704537, gene-LOC103705977 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.3206.V1.1, AsparagusV1_07.3494.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G18643, Ftri15G07812 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G06770.1, AT2G30580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007754m.g.v1.0, Thhalv10016711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05500.v2.2, Sp4g13130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g013550.2N, BniB06g019630.2N, BniB08g019050.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G1365, Ceq06G2390, Ceq07G0384 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G1427, Cgl06G2514, Cgl07G0397 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g01350, gene.Cymno06g12750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41090 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2692, nbisL1-mrna-9739 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2250, evm.TU.LG03.2251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007908, Pov_00024666 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06949 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1206, AH05.3962, BH01.793, BH05.4055, CH01.1443 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0216740, gene-QOZ80_3AG0225140 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.5HG0433570.1, HORVU.MOREX.r3.5HG0509170.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000709, gene-QYE76_061958, gene-QYE76_062030 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G018520, Oco05G023190, Oco06G019280, Oco06G024080 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g43360.2, LOC_Os03g53080.1, LOC_Os12g40790.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G086000, gene-BS78_01G149100 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104440, Pt_Chr0107099, Pt_Chr0402676, Pt_Chr0704270 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G005620, Chr01G009820, Chr04G018540, Chr04G024580 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G126500, Tel5E01G602600, Tel5E01G607200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG009030, gene_TRIDC5AG055360 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G058000.1, TraesCS5A02G378600.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb031130_P001, Zm00001eb051090_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15024, nbis-gene-44598 |
| Poaceae | Zoysia macrostachya | 6 | Zma_g25287, Zma_g2825, Zma_g3231, Zma_g4823, Zma_g508 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1243, evm.TU.LG20.1257 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1940, evm.TU.Scaffold_3_RagTag.1235 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-1557, nbisL1-mrna-21240, nbisL1-mrna-3357 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-1138, nbisL1-mrna-11786, nbisL1-mrna-13207 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13780, nbisL1-mrna-18347, nbisL1-mrna-2495 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000003l.488, evm.TU.utg000009l.125 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00001590, Maker00005516, Maker00009142, Maker00011220 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-12913, nbisL1-mrna-1471, nbisL1-mrna-19257 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-16250, nbisL1-mrna-1937, nbisL1-mrna-258 ... |
| Salicaceae | Populus euphratica | 7 | populus_peu07471, populus_peu13588, populus_peu13589 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607935, gene-LOC132610677 |
| Solanaceae | Solanum chilense | 3 | SOLCI001138100, SOLCI002795600, SOLCI004328200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107021589, gene-LOC107022044, gene-LOC107029630 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_5782, gene_5988 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2792 |
| Zosteraceae | Zostera marina | 2 | Zosma05g22660.v3.1, Zosma06g23960.v3.1 |