Basic Information
Locus ID:
Ag10G00691
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box kelch-repeat protein OR23
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 130791828 | 130796114 | + | Ag10G00691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 44,855.10 Da | 48.85 | 75.75 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 152 | 198 | 2.0E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 97 | 149 | 1.1E-10 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 92 | 1.18E-5 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 63 | 383 | 2.35E-39 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 237 | 397 | 2.0E-7 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 53 | 236 | 8.9E-30 | IPR015915 |
| SMART | SM00612 | kelc_smart | 108 | 163 | 2.5E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 164 | 216 | 0.096 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03030.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017241585.1 | PREDICTED: F-box/kelch-repeat protein OR23 [Daucus carota subsp. sativus] | 0 |
| Q0V7S6 | F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana OX=3702 GN=OR23 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166CH53 | F-box/kelch-repeat protein OR23 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012527 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.120201 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.06648 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.643621 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.201951 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.94262 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.546419 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.786267 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.364491 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.414776 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.523832 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.016548 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.699581 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.966738 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.429245 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.437982 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.469632 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.814132 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.069653 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.948023 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.20613 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.501172 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.150223 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.419716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.424364 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.202133 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.055159 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.084888 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.126974 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.829363 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.624494 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.408823 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.651923 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.488915 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.954451 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.550728 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.501933 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.238007 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.014232 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.545922 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.875383 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.62541 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 56.176247 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 29.377882 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 24.75169 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.678686 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.971931 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.163292 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.378165 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.775884 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.012878 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16177, jg37830, jg37831 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13513 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000230 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g120760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31493, Sbi_jg57788 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25438 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019530 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54380, Sgl59713 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006726, gene:ENSEOMG00000023080 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026010, CQ.Regalona.r1.5BG0027540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016630 |
| Apiaceae | Apium graveolens | 2 | Ag10G00691, Ag6G02708 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G002450, scaffold000558G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706073 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G19850, Ftri9G02652 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028657m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1361 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1234 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002181 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10295, Lb2G10298 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1563, BH07.1533, CH07.1316, CH07.1317 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0111100, gene-QOZ80_2BG0164540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0563600.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052784, gene-QYE76_052808 |
| Poaceae | Oryza coarctata | 2 | Oco03G008750, Oco04G009120 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g21110.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G001280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G264900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG017370, gene_TRIDC6BG023050 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G129100.1, TraesCS6B02G157400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb235230_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34028 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15277 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1163, evm.TU.LG09.812 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.973 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11260, nbisL1-mrna-11264, nbisL1-mrna-11266 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7003 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18338 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.482 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009297 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1464 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5077 |
| Salicaceae | Populus euphratica | 2 | populus_peu15158, populus_peu32823 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610659 |
| Solanaceae | Solanum chilense | 1 | SOLCI001451600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029399 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20263_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2354 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23780.v3.1 |