Basic Information
Locus ID:
Ag10G00653
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF3128)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 124624802 | 124628954 | + | Ag10G00653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 12,294.87 Da | 54.26 | 66.64 | -0.49 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25315.2 | Expressed protein. | 0 |
| RefSeq | XP_017244777.1 | PREDICTED: uncharacterized protein C227.17c-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165A9K7 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015484 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 26.060356 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.627619 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.380642 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.314508 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.271946 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.996883 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.179543 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.744121 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.643856 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.915628 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.576788 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.675602 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.070028 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.165545 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.73498 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.345675 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.637318 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.010748 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.867921 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.85708 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.100891 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 38.036999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 45.882736 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.872833 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.371889 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.945992 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.884441 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.805811 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.63986 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.188475 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 26.954119 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 25.025167 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 26.935209 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 33.700165 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.602613 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.251497 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 22.743757 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.682526 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.220317 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.701612 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.272701 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.466545 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 38.78653 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 31.33596 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.694201 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 34.557549 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.200655 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 84.994911 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 71.334106 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 74.525414 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35963, jg8186 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26047 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011486 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11903, Sbi_jg46847 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009468 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl80319, Sgl82778, Sgl82786 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006352, gene:ENSEOMG00000022296 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0013160, CQ.Regalona.r1.5BG0013570 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30057250 |
| Apiaceae | Apium graveolens | 3 | Ag10G00653, Ag2G01028, AgUnG00348 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009480 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696330, gene-LOC103717681, gene-LOC120103912 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G25001 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25315.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026551m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081730.2N, BniB05g011930.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1719 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g12770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.772 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19595 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2107, BH03.2304, CH03.2421 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536810, gene-QOZ80_6BG0490110 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0083960.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005439 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g34120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G025600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105311, Pt_Chr0600690, Pt_Chr0600692, Pt_Chr0600694 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G014870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G613300, Tel5E01G376900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG055300, gene_TRIDC1BG063380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G375700.1.cds1, TraesCS1B02G396100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb314390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19729, nbis-gene-30674 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30402, Zma_g30403, Zma_g32634 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1061, evm.TU.LG11.462 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g15660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24136 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17199, nbisL1-mrna-3073 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.203 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017897 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5776 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12067 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644533 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008527 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3797 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09750.v3.1 |