Basic Information
Locus ID:
Ag10G00646
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ATP10 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 123355677 | 123359021 | + | Ag10G00646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 29,949.57 Da | 43.53 | 90.08 | -0.20 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08220.1 | 0 | |
| RefSeq | XP_017244984.1 | PREDICTED: uncharacterized protein LOC108216668 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165A9D6 | ATPase assembly factor ATP10, mitochondria OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015495 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.909809 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.768205 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.112139 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.429076 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.107526 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.072393 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.844355 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.598995 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.22024 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.06777 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.160742 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.033941 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.508917 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.414881 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.655331 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.217806 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.428645 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.783422 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.679625 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.293617 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.103806 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.020573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.907106 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.311407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.4487 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.83042 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.797768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.575936 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.689178 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.770617 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.988611 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.45067 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.185624 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.357412 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.850562 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.36814 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.853798 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.944062 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.684602 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.747133 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.690952 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.225348 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.525127 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.711073 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.997774 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.283997 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.477765 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.935291 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.335503 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.529179 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8199 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21229 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011647 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11949, Sbi_jg46875 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21165 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009500, GOSA_00009503 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80351, Sgl82813 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013740, gene:ENSEOMG00000037935 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010390, CQ.Regalona.r1.9BG0012230 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30032350, pistato.v30057450, pistato.v30242530 |
| Apiaceae | Apium graveolens | 1 | Ag10G00646 |
| Arecaceae | Cocos nucifera | 1 | scaffold007047G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708780 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.902.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G11149 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008429m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g06870.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g003960.2N, BniB03g002630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1699 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1702 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05750 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.798 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015882 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G15098, Lb3G18952, Lb3G20793, Lb3G20795, Lb4G23353 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1133, BH05.1357, CH05.1335 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0403060, gene-QOZ80_5BG0451470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0027680.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G003420, Oco10G003410 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g08410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G069100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501661, Pt_Chr0501712 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G011610, Chr12G025090, Chr22G014130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G216100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG013870, gene_TRIDC1BG020490 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G116500.1, TraesCS1B02G136500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb345720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27779 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1047, evm.TU.LG11.474 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.436 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30687 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12524 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22067 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.223 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015586 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4131 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22192 |
| Salicaceae | Populus euphratica | 1 | populus_peu35418 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600501 |
| Solanaceae | Solanum chilense | 1 | SOLCI005772600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003360 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3707_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1884 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09710.v3.1 |