Basic Information
Locus ID:
Ag10G00614
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc-finger domain of monoamine-oxidase A repressor R1 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 119465773 | 119471819 | + | Ag10G00614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 95,680.56 Da | 45.77 | 70.79 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 37 | 125 | 2.3E-25 | IPR018866 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 216 | 251 | 7.6E-9 | IPR018866 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 153 | 188 | 6.7E-9 | IPR018866 |
| Pfam | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | 661 | 690 | 5.0E-7 | IPR028942 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 279 | 314 | 7.6E-9 | IPR018866 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 551 | 619 | 9.235067 | IPR018501 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 450 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67780.1 | Zinc-finger domain of monoamine-oxidase A repressor R1 protein. | 0 |
| RefSeq | XP_017245261.1 | PREDICTED: uncharacterized protein LOC108216911 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q96GN5 | Cell division cycle-associated 7-like protein OS=Homo sapiens OX=9606 GN=CDCA7L PE=1 SV=2 | 0 | |
| TrEMBL | A0A162A717 | DDT domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015516 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.728595 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.00987 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.639646 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.241056 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.40915 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.950866 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.87978 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.509392 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.839012 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.200411 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.819035 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.224659 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.189563 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.832873 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.993973 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.764992 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.709355 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.411928 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.615188 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.706658 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.061361 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.269145 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.081754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.301435 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.981168 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.805603 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.457253 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.885717 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.519917 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.892343 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.604661 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.385417 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.85487 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.98066 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.521894 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.349712 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.3358 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.511594 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.63574 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.682478 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.911664 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.322688 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.967467 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.044498 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.58563 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.508161 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.652882 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.45934 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.55719 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.787203 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17253, jg19552 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16598 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035453 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g026520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21872, Sbi_jg29522 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15876 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008501, GOSA_00008502 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63173, Sgl63310, Sgl67787 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018935, gene:ENSEOMG00000023586 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0017760, CQ.Regalona.r1.2AG0019550 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30146140, pistato.v30191740 |
| Apiaceae | Apium graveolens | 6 | Ag10G00614, Ag1G00293, Ag4G00509, Ag4G00510, Ag4G00511 ... |
| Arecaceae | Cocos nucifera | 2 | scaffold019397G000010, scaffold030933G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714000 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.3076.V1.1, AsparagusV1_01.3077.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G34102, Ftri18G30116 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G67270.1, AT1G67780.1, AT5G38690.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10015379m.g.v1.0, Thhalv10018457m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp5g22200.v2.2, Sp7g03230.v2.2, Sp7g03880.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB03g044490.2N, BniB05g063340.2N, BniB06g060200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0766 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0763 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0042s00005.v1.0, Dusal.0120s00021.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g27390, gene.Thate04g19810, gene.Thate07g21020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11849 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2022, evm.TU.LG02.428 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00013964, Pov_00028238, Pov_00028239, Pov_00028241 ... |
| Plumbaginaceae | Limonium bicolor | 4 | Lb6G29840, Lb6G29841, Lb6G29847, Lb6G29848 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1371, BH07.1561, CH07.1431 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0111570, gene-QOZ80_2BG0165030 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0231630.1, HORVU.MOREX.r3.6HG0565670.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_017876, gene-QYE76_017877, gene-QYE76_020198 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G008640, Oco04G009050, Oco09G005700, Oco10G006290 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g20950.1, LOC_Os05g23530.4 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G120600, gene-BS78_04G131700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0201868, Pt_Chr0202474, Pt_Chr0202475 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030590, Chr09G001490, Chr15G021980 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G145500, Tel3E01G145600, Tel6E01G287400 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC2BG044370, gene_TRIDC3AG009660 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS3A02G080700.1, TraesCS3B02G095100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb181150_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43914, nbis-gene-45288 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12667, Zma_g15251 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.824, evm.TU.LG18.171, evm.TU.LG25.504 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02770, gene.Posoc04g22810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.480 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15386 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15786 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-380 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.260 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007662 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13820 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3762 |
| Salicaceae | Populus euphratica | 3 | populus_peu04735, populus_peu04736, populus_peu12940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623090 |
| Solanaceae | Solanum chilense | 1 | SOLCI004370000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008878 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16798_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1212 |
| Zosteraceae | Zostera marina | 3 | Zosma01g04020.v3.1, Zosma01g31980.v3.1, Zosma01g32050.v3.1 |