Basic Information
Locus ID:
Ag10G00587
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Necessary for protein translocation in the endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 116132081 | 116132858 | + | Ag10G00587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.65 | 10,802.10 Da | 53.88 | 65.38 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03911 | Sec61beta family | 56 | 95 | 1.9E-18 | IPR016482 |
| PIRSF | PIRSF006398 | Sec61_beta | 14 | 103 | 3.1E-27 | IPR030671 |
| PIRSF | PIRSF006398 | Sec61_beta | 2 | 24 | 850.0 | IPR030671 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60460.1 | Preprotein translocase Sec, Sec61-beta subunit protein. | 0 |
| RefSeq | XP_017245008.1 | PREDICTED: protein transport protein Sec61 subunit beta [Daucus carota subsp. sativus] | 0 |
| P38389 | Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165A8D3 | Protein transport protein Sec61 subunit beta OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015549 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.060259 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.506207 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.965642 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.951192 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.958706 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.477427 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.223461 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.309713 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.884933 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.695181 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.260611 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.405792 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.812738 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.087883 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.736382 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 44.436806 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 43.219231 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.173635 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 28.663897 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.239769 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.04599 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 39.248245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.625347 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 52.850464 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 44.77594 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.447256 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.71525 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.440624 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.736185 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.179005 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.715078 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.036297 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 46.525654 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 43.521454 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 37.197449 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 41.989159 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 44.023857 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 47.175911 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.516186 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.827098 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.77288 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.863262 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.402626 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.694185 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.305901 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.921629 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.197758 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.109783 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 38.565834 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.024059 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35865, jg8273 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7188 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg3466 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6500 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000220 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11351, Sgl16736 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0007100 |
| Apiaceae | Apium graveolens | 5 | Ag10G00569, Ag10G00587, Ag5G00900, Ag5G02889, Ag8G01647 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G003010, COCNU_04G014200, COCNU_06G002110 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103709701, gene-LOC103718128, gene-LOC120110167 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G10025, Ftri15G30559, Ftri2G03569, Ftri5G08796 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G45070.1, AT3G60540.1, AT5G60460.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001704m.g.v1.0, Thhalv10006343m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g27130.v2.2, Sp5g02680.v2.2, Sp6g22050.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g003490.2N, BniB08g011790.2N, BniB08g029330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1115 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1134, Cgl08G1778 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g19880, gene.Cymno03g00090, gene.Cymno05g01510 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.617 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002646, Pov_00031508 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10919 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2057, AH04.18, AH05.95, AH06.2653, BH02.2111, CH04.24 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0021290, gene-QOZ80_1BG0071110 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0266020.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003787, gene-QYE76_053356, gene-QYE76_065257 |
| Poaceae | Oryza coarctata | 3 | Oco01G012810, Oco02G012910, Oco23G002830 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g38510.1, LOC_Os11g01300.1, LOC_Os12g01260.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G158500, gene-BS78_05G002100 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G017420, Chr03G009190, Chr05G016560, Chr08G009330 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G359500, Tel4E01G209800, Tel5E01G034200 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG030480, gene_TRIDC3BG034700 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS3A02G207800.1.cds1, TraesCS3B02G234900.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb159930_P001, Zm00001eb266430_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25855, nbis-gene-26941 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18317, Zma_g24583 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g03040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.726 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19509, nbisL1-mrna-30323, nbisL1-mrna-8398 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18375, nbisL1-mrna-20245, nbisL1-mrna-8222 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16106, nbisL1-mrna-7080 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.161, add.evm.TU.utg000018l.48 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18451, nbisL1-mrna-8080 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15074, nbisL1-mrna-22753, nbisL1-mrna-9763 |
| Salicaceae | Populus euphratica | 2 | populus_peu31825, populus_peu35483 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605959, gene-LOC132635031, gene-LOC132640736 |
| Solanaceae | Solanum chilense | 4 | SOLCI002190600, SOLCI004534000, SOLCI004534200 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107013798, gene-LOC107018450, gene-LOC107018865 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.29592_chr10_+, gene_15128, gene_851 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2044 |
| Zosteraceae | Zostera marina | 4 | Zosma01g17440.v3.1, Zosma04g25670.v3.1, Zosma05g27860.v3.1 ... |