halophFGD

Basic Information

Locus ID: Ag10G00535

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	109490536	109492416	-	Ag10G00535

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.94	52,188.97 Da	42.01	89.87	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	293	376	1.9E-10	IPR001245
Pfam	PF19160	SPARK	27	173	1.1E-26	IPR043891
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	277	401	5.88E-20	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	266	361	6.7E-28	-
SMART	SM00219	tyrkin_6	291	419	8.3E-4	IPR020635
ProSiteProfiles	PS50011	Protein kinase domain profile.	291	474	11.722046	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	297	319	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G11050.1	Protein kinase superfamily protein.
RefSeq	XP_017246316.1	PREDICTED: probable receptor-like protein kinase At1g11050 [Daucus carota subsp. sativus]
Swiss-Prot	O04086	Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana OX=3702 GN=At1g11050 PE=2 SV=1
TrEMBL	A0A165A7N9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015591 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.343251	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.367613	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.951851	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.688988	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.354495	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.993894	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.547658	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.771179	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.07476	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.505927	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.466406	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.458503	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.756874	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.481587	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.257666	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.148321	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.332484	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.340128	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.052468	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.12394	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.096472	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.074246		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.562635		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.347339		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.855064		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.807157		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.355539		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.423176		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.320547	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.336721	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.572944	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.734194	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.159155	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.716994	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.742339	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.279727	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.34029	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.20521	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg23147, jg28393, jg30086
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17530, gene_1916
Amaranthaceae	Atriplex hortensis	1	Ah031463
Amaranthaceae	Beta vulgaris	2	BVRB_5g098310, BVRB_6g143620
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12956, Sbi_jg4865, Sbi_jg52912, Sbi_jg7236
Amaranthaceae	Salicornia europaea	2	Seu_jg12776, Seu_jg8946
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001485, GOSA_00010987
Amaranthaceae	Suaeda glauca	5	Sgl32162, Sgl37457, Sgl37460, Sgl51641, Sgl56940
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003137, gene:ENSEOMG00000003293 ... gene:ENSEOMG00000006217, gene:ENSEOMG00000020610, gene:ENSEOMG00000025748, gene:ENSEOMG00000026943
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0014120, CQ.Regalona.r1.5AG0000750 ... CQ.Regalona.r1.5BG0000890, CQ.Regalona.r1.6AG0012060, CQ.Regalona.r1.6BG0012190
Anacardiaceae	Pistacia vera	4	pistato.v30039030, pistato.v30039070, pistato.v30051010 ... pistato.v30291720
Apiaceae	Apium graveolens	8	Ag10G00485, Ag10G00535, Ag10G00536, Ag6G01860, Ag6G01861 ... Ag6G02826, Ag7G02066, Ag7G02067
Arecaceae	Cocos nucifera	3	COCNU_01G020370, COCNU_01G020390, COCNU_01G020400
Arecaceae	Phoenix dactylifera	3	gene-LOC103702601, gene-LOC103702728, gene-LOC113462444
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.2930.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G12685, Ftri16G10698, Ftri16G31916
Brassicaceae	Arabidopsis thaliana	1	AT1G11050.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007041m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g09740.v2.2
Brassicaceae	Brassica nigra	1	BniB02g006020.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1864, Ceq09G0172
Casuarinaceae	Casuarina glauca	1	Cgl09G0205
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5252
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG06.843, evm.TU.LG06.844, evm.TU.LG08.747
Plantaginaceae	Plantago ovata	2	Pov_00002005, Pov_00039962
Poaceae	Echinochloa crus-galli	1	AH06.2396
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0042210, gene-QOZ80_5AG0372630 ... gene-QOZ80_5BG0419980
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0065070.1.CDS1 ... HORVU.MOREX.r3.3HG0307170.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_013167, gene-QYE76_056933, gene-QYE76_056967
Poaceae	Oryza coarctata	4	Oco01G026650, Oco02G027660, Oco09G010040, Oco10G010130
Poaceae	Oryza sativa	2	LOC_Os01g66020.1, LOC_Os05g34950.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G359000, gene-BS78_09G149500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505047, Pt_Chr0600078
Poaceae	Sporobolus alterniflorus	6	Chr05G030250, Chr0G023520, Chr0G032280, Chr18G009710 ... Chr22G007970, Chr31G002670
Poaceae	Thinopyrum elongatum	2	Tel1E01G435500, Tel3E01G646300
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG039480, gene_TRIDC1BG044930 ... gene_TRIDC3AG057900, gene_TRIDC3BG064960
Poaceae	Triticum aestivum	6	TraesCS1A02G264400.1.cds1, TraesCS1B02G275100.1.cds1 ... TraesCS1D02G264600.1.cds1, TraesCS3A02G406600.1.cds1, TraesCS3B02G440300.1.cds1, TraesCS3D02G401800.1.cds1
Poaceae	Zea mays	2	Zm00001eb349080_P001, Zm00001eb366140_P001
Poaceae	Zoysia japonica	1	nbis-gene-23918
Poaceae	Zoysia macrostachya	2	Zma_g28268, Zma_g9137
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.3500, evm.TU.LG08.1793, evm.TU.LG16.82 ... evm.TU.LG22.55
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g11250
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.1425, evm.TU.Scaffold_7_RagTag.1136
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-18710, nbisL1-mrna-3707, nbisL1-mrna-9308
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-455, nbisL1-mrna-5560
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13123, nbisL1-mrna-18869
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000002l.163, add.evm.TU.utg000009l.151
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-19996, nbisL1-mrna-22439, nbisL1-mrna-22441
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-19196, nbisL1-mrna-19198, nbisL1-mrna-9805
Salicaceae	Populus euphratica	3	populus_peu09683, populus_peu14773, populus_peu24837
Solanaceae	Lycium barbarum	2	gene-LOC132598690, gene-LOC132627151
Solanaceae	Solanum chilense	1	SOLCI002907800
Solanaceae	Solanum pennellii	1	gene-LOC107030431
Tamaricaceae	Reaumuria soongarica	2	STRG.17067_chr08_+, gene_15117
Tamaricaceae	Tamarix chinensis	1	TC05G1094
Zosteraceae	Zostera marina	1	Zosma02g06860.v3.1