Basic Information
Locus ID:
Ag10G00496
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
osmotin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 105501119 | 105502031 | - | Ag10G00496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 26,188.62 Da | 56.98 | 65.84 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09218 | TLP-PA | 22 | 242 | 1.14838E-107 | - |
| Pfam | PF00314 | Thaumatin family | 27 | 242 | 1.8E-74 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 22 | 242 | 4.71E-71 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 22 | 242 | 3.0E-78 | IPR037176 |
| SMART | SM00205 | tha2 | 23 | 243 | 3.2E-125 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 243 | 4.5E-91 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 20 | 243 | 42.544281 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 123 | 139 | 9.8E-9 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 22 | 34 | 9.8E-9 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 233 | 242 | 9.8E-9 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 71 | 82 | 9.8E-9 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28790.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_017244727.1 | PREDICTED: osmotin-like protein [Daucus carota subsp. sativus] | 0 |
| Q41350 | Osmotin-like protein OS=Solanum lycopersicum OX=4081 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165A750 | Thaumatin-like protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 293.548035 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 132.007919 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 121.833794 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 97.535667 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 107.874336 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 46.232269 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 46.555038 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.44776 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 576.573914 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 525.125916 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 547.176453 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 485.200867 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 633.052185 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 758.9552 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.091632 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.590731 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.129043 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.568282 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.407346 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.372642 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.192963 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 39.657223 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.745712 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 83.608505 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 38.719513 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.087267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.042004 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.317049 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.676258 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.172129 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.874238 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.127896 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.282704 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 613.631836 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.18691 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.067793 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.795439 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.908808 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.304218 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.600384 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.062631 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.152878 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.19479 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.123444 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.279588 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.429446 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 312.235748 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 387.567719 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 403.167786 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23343 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7017 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028064 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g174190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1795, Sbi_jg34726 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003169 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72996, Sgl76533 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008667, gene:ENSEOMG00000038338 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0002530, CQ.Regalona.r1.9BG0003150 |
| Apiaceae | Apium graveolens | 2 | Ag10G00496, Ag2G00881 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G007610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696718 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.157.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G29184 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017135m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11630.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g015070.2N, BniB06g017990.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2211 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2365 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g00480, gene.Cymno05g16470 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g00680, gene.Thate01g33880 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040530 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3824, BH02.3836, BH07.4145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0039360, gene-QOZ80_1BG0089380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0302860.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056258 |
| Poaceae | Oryza coarctata | 2 | Oco01G024510, Oco02G025380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g62260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G330700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G005100, Chr05G028290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G572500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG067150, gene_TRIDC3AG051480 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2B02G461200.1.cds1, TraesCS3A02G357800.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb039050_P001, Zm00001eb239460_P001 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11510 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG16.1590, evm.TU.LG26.77, evm.TU.LG26.78 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g34260, gene.Posoc02g01600, gene.Posoc07g05100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60437.14, evm.TU.60438.15 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24534 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10271, nbisL1-mrna-19671 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.182, add.evm.TU.utg000027l.184 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015590, Maker00017837 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18475 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11772, nbisL1-mrna-14983 |
| Salicaceae | Populus euphratica | 3 | populus_peu02143, populus_peu02247, populus_peu35653 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643543 |
| Solanaceae | Solanum chilense | 1 | SOLCI003807200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005082 |
| Zosteraceae | Zostera marina | 2 | Zosma01g16510.v3.1, Zosma04g15240.v3.1 |