Basic Information
Locus ID:
Ag10G00460
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 101407945 | 101415058 | + | Ag10G00460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 58,916.12 Da | 43.41 | 70.89 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16106 | Ubl_Dsk2p_like | 21 | 93 | 3.67072E-34 | - |
| CDD | cd14399 | UBA_PLICs | 520 | 558 | 1.03954E-16 | - |
| Pfam | PF00240 | Ubiquitin family | 23 | 90 | 9.1E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 520 | 556 | 2.9E-10 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 516 | 558 | 5.11E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 15 | 107 | 1.83E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 17 | 106 | 7.6E-21 | - |
| Gene3D | G3DSA:1.10.260.100 | - | 200 | 258 | 1.4E-10 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 502 | 561 | 5.4E-22 | - |
| SMART | SM00727 | CBM | 382 | 412 | 1.9 | IPR006636 |
| SMART | SM00727 | CBM | 151 | 192 | 0.041 | IPR006636 |
| SMART | SM00727 | CBM | 205 | 244 | 1.9E-10 | IPR006636 |
| SMART | SM00213 | ubq_7 | 21 | 92 | 3.6E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 520 | 558 | 1.3E-7 | IPR015940 |
| SMART | SM00727 | CBM | 416 | 451 | 4.0E-5 | IPR006636 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 90 | 20.631401 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 515 | 559 | 13.004739 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 336 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17200.1 | ubiquitin family protein. | 0 |
| RefSeq | XP_017247787.1 | PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SII8 | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana OX=3702 GN=DSK2B PE=1 SV=1 | 0 | |
| TrEMBL | A0A165A625 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015664 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 55.163395 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 53.013302 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.625523 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 50.010132 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 48.247993 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 45.370552 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.273167 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 40.503807 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 67.206009 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 68.546425 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 68.005287 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 61.612434 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 61.096714 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 59.221424 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.144535 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 39.136383 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 38.970078 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.199738 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 29.92502 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 69.077271 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 67.083305 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.240852 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 45.044128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 47.091679 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 45.060917 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.453461 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 42.315186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 37.525215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 43.995842 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.208002 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 33.578403 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 31.108782 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 70.237968 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 57.498413 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 95.881157 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 63.417576 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 38.809986 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 43.412392 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 40.475533 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 35.9944 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 27.534344 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 232.377777 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 134.089249 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 82.936485 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 66.822884 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 227.23735 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 60.053272 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 57.662846 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 58.153622 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 54.477695 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17241, jg30393, jg827 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21537 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009545 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g212540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10935, Sbi_jg47408 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21655 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018765, GOSA_00018766 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55594, Sgl60808 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017866, gene:ENSEOMG00000038091 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0028090, CQ.Regalona.r1.7BG0001860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30108830, pistato.v30212120 |
| Apiaceae | Apium graveolens | 2 | Ag10G00460, Ag11G04484 |
| Arecaceae | Cocos nucifera | 5 | COCNU_07G014620, COCNU_08G009250, COCNU_09G005280 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701100, gene-LOC103706874, gene-LOC103716592 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1056.V1.1, AsparagusV1_07.2371.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G18358, Ftri17G18081, Ftri18G21293, Ftri6G03217 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17190.1, AT2G17200.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022621m.g.v1.0, Thhalv10024813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g30510.v2.2, Sp7g33070.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g013480.2N, BniB03g064870.2N, BniB04g026440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0069, Ceq07G1827 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0078, Cgl07G1993 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g10280, gene.Cymno03g05490 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0814s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g07340, gene.Thate06g18290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3087, nbisL1-mrna-5640, nbisL1-mrna-6938 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2866 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007070 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21724 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3048, AH01.5195, BH01.3394, BH01.5014, CH01.3635 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0115290, gene-QOZ80_2BG0169080 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0054790.1, HORVU.MOREX.r3.4HG0409910.2 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012354, gene-QYE76_071095 |
| Poaceae | Oryza coarctata | 4 | Oco05G001950, Oco06G001900, Oco19G009180, Oco20G009050 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g03920.1, LOC_Os10g39620.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G298700, gene-BS78_01G493000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100404, Pt_Chr0100474, Pt_Chr0705396 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G038200, Chr04G005290, Chr06G028560, Chr07G006270 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G349500, Tel4E01G536300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG030700, gene_TRIDC1BG036210 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G203000.1, TraesCS1B02G217000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb002530_P003, Zm00001eb022400_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-3021, nbis-gene-36206, nbis-gene-47035 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15615, Zma_g2145 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2022, evm.TU.LG23.274 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g11530 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.39, evm.TU.Scaffold_6_RagTag.2182 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-117, nbisL1-mrna-16953, nbisL1-mrna-171 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11429, nbisL1-mrna-20751 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11651, nbisL1-mrna-5846 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1338, evm.TU.utg000019l.1194 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006779, Maker00007058 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15718, nbisL1-mrna-6602 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2483, nbisL1-mrna-2933 |
| Salicaceae | Populus euphratica | 3 | populus_peu08431, populus_peu14014, populus_peu36920 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616489, gene-LOC132621272, gene-LOC132623848 |
| Solanaceae | Solanum chilense | 1 | SOLCI004199200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107010680, gene-LOC107011114, gene-LOC107014744 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11670_chr02_-, gene_12287 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0250 |
| Zosteraceae | Zostera marina | 2 | Zosma04g21410.v3.1, Zosma06g28650.v3.1 |