Basic Information
Locus ID:
Ag10G00415
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 97003923 | 97006420 | + | Ag10G00415 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 83,170.26 Da | 32.29 | 98.75 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 417 | 463 | 1.1E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 517 | 565 | 1.1E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 592 | 618 | 0.0063 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 216 | 242 | 4.1E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 88 | 111 | 0.093 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 316 | 361 | 3.0E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 391 | 412 | 0.64 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 369 | 479 | 1.5E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 170 | 269 | 2.5E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 492 | 712 | 3.2E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 271 | 368 | 4.4E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 12 | 169 | 2.3E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 419 | 446 | 8.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 87 | 118 | 7.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 520 | 554 | 3.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 593 | 618 | 0.0014 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 318 | 352 | 7.0E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 216 | 242 | 1.3E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 518 | 552 | 10.764054 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 214 | 244 | 9.415814 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 417 | 451 | 10.950397 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 316 | 350 | 10.446177 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 589 | 619 | 8.637562 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17210.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_017245178.1 | PREDICTED: pentatricopeptide repeat-containing protein At2g17210 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SII7 | Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E77 PE=3 SV=2 | 0 | |
| TrEMBL | A0A165A5M2 | Pentatricopeptide repeat-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015683 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.014142 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.414267 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.179262 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.315056 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.459684 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.589822 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.480955 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.295358 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.440507 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.392411 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.512347 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.547572 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.094162 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.402225 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.47728 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.537091 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.961207 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.491338 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.773509 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.126491 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.336279 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.952275 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.353393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.230716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.5854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.638604 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.628802 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.739583 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.849067 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.102571 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.18717 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.101632 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.183154 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.822863 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.662872 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.535612 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.406608 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.088137 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.856744 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.769573 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.339168 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.050476 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.166346 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.876457 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.777178 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.136881 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.430196 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.36723 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.976466 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.545462 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27612, jg27613 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26338 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g212480 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10913, Sbi_jg10915, Sbi_jg10916, Sbi_jg47421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21663 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018759 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55601, Sgl60815 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015190, gene:ENSEOMG00000039054 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027890, CQ.Regalona.r1.7BG0001720 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30108780, pistato.v30169640 |
| Apiaceae | Apium graveolens | 1 | Ag10G00415 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005360 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701176 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2373.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G02897 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g064900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1847 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11039 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.424 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05603 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151770, gene-QOZ80_2BG0207140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0083550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020676 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G000060 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G609100, Tel1E01G609200, Tel1E01G609400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG054850, gene_TRIDC1BG062750 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G372800.1.cds1, TraesCS1B02G392800.1.cds1 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14772 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1953, evm.TU.LG15.1205 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2381 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.4 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18558 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599397 |
| Solanaceae | Solanum chilense | 1 | SOLCI003417500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006501 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8823 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23610.v3.1 |