Basic Information
Locus ID:
Ag10G00372
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 92111311 | 92117205 | + | Ag10G00372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 13,965.73 Da | 38.91 | 56.53 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01096 | Transcription factor S-II (TFIIS) | 81 | 116 | 2.1E-12 | IPR001222 |
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | 78 | 120 | 1.3E-12 | - |
| Gene3D | G3DSA:2.20.25.10 | - | 50 | 118 | 4.4E-13 | - |
| SMART | SM00440 | Cys4_2 | 80 | 119 | 5.3E-6 | IPR001222 |
| PIRSF | PIRSF005586 | RNApol_RpoM | 9 | 121 | 1.3E-23 | IPR012164 |
| ProSiteProfiles | PS51133 | Zinc finger TFIIS-type profile. | 78 | 118 | 10.852277 | IPR001222 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25940.1 | TFIIB zinc-binding protein. | 0 |
| RefSeq | XP_017244992.1 | PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Daucus carota subsp. sativus] | 0 |
| Q1RMP0 | DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1 | 0 | |
| TrEMBL | A0A165A4C9 | DNA-directed RNA polymerase subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015742 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.135082 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.487062 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.581158 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.972609 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.993081 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.27574 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.848063 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.48428 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.17802 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.227444 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.170008 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.837084 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.614944 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.489552 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.445682 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.217959 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.237036 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.732328 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.541792 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.133667 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.360382 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.42185 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.546106 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.344999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.358389 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.465519 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.57112 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.281813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.270798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.586426 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.031902 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.041271 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.218988 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 35.939808 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.602287 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.217934 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.535357 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.343947 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.36924 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.214824 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.794973 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.313601 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 21.436522 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 31.039471 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.127838 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.168093 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.431522 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 45.734211 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.43663 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 40.56934 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10537, jg6365 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19071 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036204 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg23706, Sbi_jg39950, Sbi_jg55281 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12491, Seu_jg14385 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014064 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12179, Sgl17552 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016600, gene:ENSEOMG00000032884 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0021320, CQ.Regalona.r1.1BG0003170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049200 |
| Apiaceae | Apium graveolens | 1 | Ag10G00372 |
| Arecaceae | Cocos nucifera | 2 | COCNU_13G006510, scaffold003371G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695639, gene-LOC113463573 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2404.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G11177 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20065.2, AT3G25940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009132m.g.v1.0, Thhalv10019327m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g028950.2N, BniB04g034790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0940 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0268s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1589 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002569 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32128 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.851, BH01.994, CH01.1038 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219050, gene-QOZ80_3BG0264300 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062437, gene-QYE76_062880 |
| Poaceae | Oryza coarctata | 2 | Oco05G021660, Oco06G022430 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G106900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105040 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G026950, Chr12G030390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G082700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG073740, gene_TRIDC3AG017340 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G267900.1, TraesCS4B02G046500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb054840_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15918 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2956 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2891, evm.TU.LG02.2892, evm.TU.LG23.1094 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.48 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24237 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18172 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14096 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.282 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018855 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15000 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21456 |
| Salicaceae | Populus euphratica | 1 | populus_peu15678 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615336 |
| Solanaceae | Solanum chilense | 1 | SOLCI005534000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015999 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1117 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2891 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26290.v3.1 |