halophFGD

Basic Information

Locus ID: Ag10G00363

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: non-specific phospholipase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	90389050	90392376	+	Ag10G00363

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.19	58,528.06 Da	46.12	66.54	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04185	Phosphoesterase family	12	381	1.2E-99	IPR007312
Gene3D	G3DSA:3.40.720.10	Alkaline Phosphatase, subunit A	2	183	1.1E-29	IPR017850
Gene3D	G3DSA:3.40.720.10	Alkaline Phosphatase, subunit A	247	427	3.0E-49	IPR017850

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity) GO:0016788 (hydrolase activity, acting on ester bonds)

KEGG Pathway

KO Term:

K01114 (phospholipase C [EC:3.1.4.3])

Pathway:

ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko00564 (Glycerophospholipid metabolism) map00564 (Glycerophospholipid metabolism) ko00565 (Ether lipid metabolism) map00565 (Ether lipid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko02024 (Quorum sensing) map02024 (Quorum sensing)

Reaction:

R01312 (Phosphatidylcholine + H2O <=> 1,2-Diacyl-sn-glycerol + Choline phosphate) R02027 (Phosphatidylglycerol + H2O <=> 1,2-Diacyl-sn-glycerol + sn-Glycerol 3-phosphate) R02052 (Phosphatidylethanolamine + H2O <=> 1,2-Diacyl-sn-glycerol + Ethanolamine phosphate) R03332 (1-Phosphatidyl-D-myo-inositol + H2O <=> Inositol 1-phosphate + 1,2-Diacyl-sn-glycerol) R07381 (O-1-Alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine + H2O <=> 1-Alkenyl-2-acylglycerol + Ethanolamine phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G03520.1	non-specific phospholipase C3. Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses. Role in lipid synthesis.
RefSeq	XP_017245126.1	PREDICTED: non-specific phospholipase C3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SRQ6	Non-specific phospholipase C3 OS=Arabidopsis thaliana OX=3702 GN=NPC3 PE=1 SV=1
TrEMBL	A0A162A6H6	Non-specific phospholipase C3-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015756 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.83875	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.382845	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.637573	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	8.006641	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.428671	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.347982	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.966491	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.646377	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.107229	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	4.218525	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	5.339128	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.834011	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.288068	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.654109	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.944808	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.341104	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.740696	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.274642	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.691019	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	20.516739	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.649712	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.567926	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	17.411085	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.387382	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.942981	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.823496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.163668	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.08084	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.359426	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.445185		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.026117		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.010393		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.552877		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.107622		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.266374		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.689928		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.930728		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.308814		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.193443	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.938666	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.374474	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	71.480759	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	47.99736	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.580656	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	21.005524	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	55.895134	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	18.126471	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.381415	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.129664	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.998184	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg13373, jg16656, jg1696, jg18453, jg20015, jg29107, jg29109 ... jg38014
Aizoaceae	Mesembryanthemum crystallinum	6	gene_11586, gene_1248, gene_1249, gene_1250, gene_19823 ... gene_6910
Amaranthaceae	Atriplex hortensis	5	Ah001804, Ah005074, Ah023390, Ah023392, Ah027856
Amaranthaceae	Beta vulgaris	2	BVRB_4g073710, BVRB_7g172340
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg29034, Sbi_jg29035, Sbi_jg29080, Sbi_jg31756 ... Sbi_jg3260, Sbi_jg3300, Sbi_jg34959, Sbi_jg62445
Amaranthaceae	Salicornia europaea	6	Seu_jg1019, Seu_jg25228, Seu_jg3149, Seu_jg6636, Seu_jg6670 ... Seu_jg6671
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000081, GOSA_00000082, GOSA_00000115, GOSA_00003348 ... GOSA_00007209, GOSA_00029284
Amaranthaceae	Suaeda glauca	13	Sgl11471, Sgl11526, Sgl11527, Sgl16871, Sgl16903, Sgl16904 ... Sgl17024, Sgl17025, Sgl54144, Sgl59145, Sgl59462, Sgl72771, Sgl76309
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000007418, gene:ENSEOMG00000007658 ... gene:ENSEOMG00000009522, gene:ENSEOMG00000012764, gene:ENSEOMG00000015490, gene:ENSEOMG00000030200, gene:ENSEOMG00000034183, gene:ENSEOMG00000039827, gene:ENSEOMG00000043204, gene:ENSEOMG00000048727, gene:ENSEOMG00000050641
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0008250, CQ.Regalona.r1.2BG0021150 ... CQ.Regalona.r1.4AG0002220, CQ.Regalona.r1.5AG0017100, CQ.Regalona.r1.5BG0018400, CQ.Regalona.r1.9BG0001480
Anacardiaceae	Pistacia vera	4	pistato.v30011940, pistato.v30061550, pistato.v30094120 ... pistato.v30095350
Apiaceae	Apium graveolens	4	Ag10G00220, Ag10G00363, Ag11G04136, Ag6G01511
Arecaceae	Cocos nucifera	7	COCNU_02G009060, COCNU_02G017890, COCNU_04G000240 ... COCNU_07G003790, COCNU_14G006670, COCNU_16G002010, scaffold031403G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103701653, gene-LOC103707853, gene-LOC103711783 ... gene-LOC103716538, gene-LOC103716925, gene-LOC103719809
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.1110.V1.1, AsparagusV1_04.1671.V1.1 ... AsparagusV1_07.1695.V1.1, AsparagusV1_08.2027.V1.1, AsparagusV1_10.479.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G15666, Ftri5G14721, Ftri5G21205, Ftri9G04605
Brassicaceae	Arabidopsis thaliana	6	AT1G07230.1, AT2G26870.1, AT3G03520.1, AT3G03530.1 ... AT3G03540.1, AT3G48610.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001963m.g.v1.0, Thhalv10007332m.g.v1.0 ... Thhalv10010294m.g.v1.0, Thhalv10020472m.g.v1.0, Thhalv10020514m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g05990.v2.2, Sp3g02510.v2.2, Sp3g02520.v2.2 ... Sp4g08610.v2.2, Sp5g13360.v2.2
Brassicaceae	Brassica nigra	7	BniB01g016910.2N, BniB01g059830.2N, BniB01g059840.2N ... BniB05g049030.2N, BniB06g043450.2N, BniB07g060640.2N, BniB08g061860.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G2030, Ceq05G1618, Ceq05G1619, Ceq08G1512, Ceq08G1888
Casuarinaceae	Casuarina glauca	5	Cgl01G2207, Cgl01G2229, Cgl05G1614, Cgl08G1545, Cgl08G1943
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g18650, gene.Cymno03g08600, gene.Cymno04g06470 ... gene.Cymno07g03750
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g16210, gene.Thate02g07190, gene.Thate05g09790 ... gene.Thate07g13350
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG03.1878, evm.TU.LG03.1879, evm.TU.LG03.1881 ... evm.TU.LG05.646, evm.TU.LG09.1105, evm.TU.LG09.130
Plantaginaceae	Plantago ovata	5	Pov_00016305, Pov_00016927, Pov_00017208, Pov_00031238 ... Pov_00033556
Plumbaginaceae	Limonium bicolor	6	Lb0G36898, Lb3G15616, Lb3G19556, Lb3G20103, Lb3G20105 ... Lb5G27263
Poaceae	Echinochloa crus-galli	15	AH01.446, AH02.1071, AH02.4547, AH04.1809, BH01.120 ... BH01.295, BH02.1040, BH02.4601, BH04.1836, CH01.135, CH02.1149, CH02.4650, CH04.156, CH04.2065, CH09.3319
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0006150, gene-QOZ80_1AG0046980 ... gene-QOZ80_1BG0054870, gene-QOZ80_1BG0096840, gene-QOZ80_3AG0207960, gene-QOZ80_3AG0209930, gene-QOZ80_3BG0252990, gene-QOZ80_3BG0255120, gene-QOZ80_9AG0683600, gene-QOZ80_9BG0709670
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0085590.1, HORVU.MOREX.r3.3HG0232030.1 ... HORVU.MOREX.r3.3HG0322080.1, HORVU.MOREX.r3.5HG0527960.1, HORVU.MOREX.r3.7HG0752530.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_026031, gene-QYE76_058204, gene-QYE76_060575 ... gene-QYE76_063249
Poaceae	Oryza coarctata	9	Oco01G030180, Oco02G000120, Oco02G031350, Oco05G027820 ... Oco05G029150, Oco06G028800, Oco06G030170, Oco21G007970, Oco22G009200
Poaceae	Oryza sativa	5	LOC_Os01g01190.1, LOC_Os01g72520.1, LOC_Os03g61130.1 ... LOC_Os03g63580.1, LOC_Os11g38050.1
Poaceae	Paspalum vaginatum	9	gene-BS78_01G007300, gene-BS78_01G025500, gene-BS78_K134700 ... gene-BS78_03G097100, gene-BS78_03G405800, gene-BS78_05G187900, gene-BS78_05G188200, gene-BS78_K279500, gene-BS78_K280000
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0105876, Pt_Chr0206276, Pt_Chr0206293, Pt_Chr0605452 ... Pt_Ctg00069
Poaceae	Sporobolus alterniflorus	13	Chr01G001170, Chr02G000850, Chr02G002380, Chr02G025650 ... Chr04G031790, Chr05G003370, Chr05G032100, Chr05G033930, Chr07G030820, Chr0G004160, Chr10G008310, Chr12G032800, Chr16G005190
Poaceae	Thinopyrum elongatum	5	Tel3E01G148900, Tel3E01G806000, Tel3E01G807100 ... Tel4E01G035900, Tel5E01G776700
Poaceae	Triticum dicoccoides	9	gene_TRIDC3AG009960, gene_TRIDC3AG070420 ... gene_TRIDC3BG013660, gene_TRIDC3BG079720, gene_TRIDC4AG045760, gene_TRIDC4AG054990, gene_TRIDC4BG002660, gene_TRIDC5AG069750, gene_TRIDC5BG075680
Poaceae	Triticum aestivum	15	TraesCS3A02G083200.1, TraesCS3A02G439600.2 ... TraesCS3A02G492100.1, TraesCS3B02G098100.1, TraesCS3B02G552800.1, TraesCS3B02G553200.1, TraesCS3D02G083000.1, TraesCS3D02G499600.2, TraesCS4A02G298300.1, TraesCS4A02G369500.1, TraesCS4B02G015300.1, TraesCS4D02G013500.1, TraesCS5A02G489800.2, TraesCS5B02G503200.1, TraesCS5D02G504100.1
Poaceae	Zea mays	5	Zm00001eb063230_P001, Zm00001eb064750_P001 ... Zm00001eb127030_P001, Zm00001eb140620_P001, Zm00001eb211410_P001
Poaceae	Zoysia japonica	5	nbis-gene-15549, nbis-gene-15678, nbis-gene-28133 ... nbis-gene-32370, nbis-gene-43094
Poaceae	Zoysia macrostachya	5	Zma_g11958, Zma_g133, Zma_g2454, Zma_g35, Zma_g7450
Portulacaceae	Portulaca oleracea	12	evm.TU.LG02.218, evm.TU.LG03.1700, evm.TU.LG04.1729 ... evm.TU.LG04.1732, evm.TU.LG04.1733, evm.TU.LG08.1428, evm.TU.LG09.1458, evm.TU.LG10.1220, evm.TU.LG10.1223, evm.TU.LG10.1224, evm.TU.LG14.144, evm.TU.LG22.324
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g13600, gene.Posoc02g00080, gene.Posoc02g21030 ... gene.Posoc05g13030, gene.Posoc07g00450
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1141, evm.TU.Scaffold_12_RagTag.77 ... evm.TU.Scaffold_12_RagTag.137, evm.TU.Scaffold_1_RagTag.507
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12336, nbisL1-mrna-24661, nbisL1-mrna-24723 ... nbisL1-mrna-7656
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18703, nbisL1-mrna-3762, nbisL1-mrna-4573 ... nbisL1-mrna-96
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12718, nbisL1-mrna-19386, nbisL1-mrna-19447 ... nbisL1-mrna-5534
Rhizophoraceae	Kandelia candel	9	add.evm.TU.utg000010l.80, add.evm.TU.utg000010l.82 ... add.evm.TU.utg000010l.85, evm.TU.utg000010l.210, evm.TU.utg000010l.211, evm.TU.utg000010l.212, evm.TU.utg000012l.312, evm.TU.utg000027l.483, evm.TU.utg000027l.526
Rhizophoraceae	Kandelia obovata	6	Maker00008449, Maker00008792, Maker00009052, Maker00010986 ... Maker00018013, Maker00018222
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-5470, nbisL1-mrna-5506, nbisL1-mrna-653 ... nbisL1-mrna-8483
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11616, nbisL1-mrna-11669, nbisL1-mrna-646 ... nbisL1-mrna-8792
Salicaceae	Populus euphratica	10	populus_peu01787, populus_peu02013, populus_peu02019 ... populus_peu28475, populus_peu28872, populus_peu30272, populus_peu33563, populus_peu35795, populus_peu36031, populus_peu37485
Solanaceae	Lycium barbarum	3	gene-LOC132626385, gene-LOC132631185, gene-LOC132632463
Solanaceae	Solanum chilense	3	SOLCI001222800, SOLCI001492300, SOLCI001822800
Solanaceae	Solanum pennellii	3	gene-LOC107008090, gene-LOC107012102, gene-LOC107029460
Tamaricaceae	Reaumuria soongarica	6	STRG.15792_chr06_-, STRG.27951_chr04_-, STRG.9393_chr03_+ ... gene_15711, gene_9515, gene_9516
Tamaricaceae	Tamarix chinensis	4	TC02G2922, TC03G1913, TC09G0825, TC11G1186
Zosteraceae	Zostera marina	4	Zosma02g03920.v3.1, Zosma02g07220.v3.1, Zosma02g18350.v3.1 ... Zosma06g20290.v3.1