Basic Information
Locus ID:
Ag10G00285
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Nucleotidyltransferase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 76399643 | 76427092 | - | Ag10G00285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 174,958.78 Da | 46.33 | 77.15 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03828 | Cid1 family poly A polymerase | 1473 | 1521 | 2.8E-6 | IPR002058 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 1238 | 1297 | 3.3E-6 | IPR002934 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 1213 | 1415 | 2.21E-20 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 1420 | 1552 | 8.37E-30 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 1378 | 1574 | 3.0E-46 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 1229 | 1344 | 2.3E-13 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1077 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1074 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1110 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00060.1 | Nucleotidyltransferase family protein. | 0 |
| RefSeq | XP_017247103.1 | PREDICTED: uncharacterized protein LOC108218607 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q6PB75 | Terminal nucleotidyltransferase 4A OS=Mus musculus OX=10090 GN=Tent4a PE=2 SV=3 | 0 | |
| TrEMBL | A0A162A7W4 | NTP_transf_2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015878 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.160049 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.733847 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.003845 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.468979 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.245932 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.819475 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.864929 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.984952 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.636961 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.377478 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.964369 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.201345 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.692848 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.15781 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.585919 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.297744 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.381853 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.953819 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.516079 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.432195 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.128616 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.517694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.085733 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.142801 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.369399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.415155 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.436744 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.080623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.545543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.54835 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.758229 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.062077 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.304408 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.008267 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.330923 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.599777 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.303317 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.573801 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.410425 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.107864 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.144725 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.163931 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.517291 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.000624 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.851292 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.759629 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.786777 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.907627 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.253332 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.377192 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1323 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29245, Sbi_jg3484 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000236 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11337, Sgl16726 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013338, gene:ENSEOMG00000050030 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0006570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002450 |
| Apiaceae | Apium graveolens | 1 | Ag10G00285 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G007610, COCNU_09G003120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710741, gene-LOC103712263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.203.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12240 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028362m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g041960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1124 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1144 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g02280 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.140 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014955 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31247 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2621, BH06.2424, CH06.2710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0736950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036219 |
| Poaceae | Oryza coarctata | 2 | Oco11G014920, Oco12G015090 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g45800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G222900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103209, Pt_Chr0401298 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G019970, Chr11G002690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G797400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG058740, gene_TRIDC7AG065730 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G471100.1, TraesCS7B02G373100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb274180_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40526, nbis-gene-9794 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30970, Zma_g33230 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2438 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g11570, gene.Posoc07g04340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1537 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8389, nbisL1-mrna-8635 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15150 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003131 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22743 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645746 |
| Solanaceae | Solanum chilense | 1 | SOLCI005933700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005675 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_850 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2616 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03730.v3.1 |