Basic Information
Locus ID:
Ag10G00277
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 75172621 | 75176950 | + | Ag10G00277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 31,452.42 Da | 37.38 | 55.83 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 215 | 268 | 1.33614E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 210 | 267 | 1.3E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 199 | 268 | 6.36E-15 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 170 | 281 | 1.1E-13 | - |
| SMART | SM00054 | efh_1 | 207 | 235 | 64.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 243 | 271 | 2.9E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 239 | 274 | 12.281773 | IPR002048 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 135 | 154 | 8.718357 | IPR003903 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 252 | 264 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73440.1 | calmodulin-related. | 0 |
| RefSeq | XP_017243639.1 | PREDICTED: centrin-2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162A675 | EF-hand domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015886 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.526451 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.496349 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.872244 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.145465 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.362098 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.413895 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.749618 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.604728 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.008257 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.187054 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.464163 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.991473 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.388366 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.616803 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.410176 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.536409 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.550597 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.947221 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.736504 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.634937 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.788797 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.965771 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.213388 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.673567 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.624239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.278026 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.699284 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.838265 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.521039 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.932049 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.35815 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.03769 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.667706 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.251343 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.653682 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.09807 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.694548 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.591865 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.13823 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.020352 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.112765 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.848843 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.996768 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.299408 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.150492 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.43492 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.842795 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.496246 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.504141 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.624361 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29695 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1325 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023214 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29250, Sbi_jg3490 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6475 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000240, GOSA_00000241 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11328, Sgl11329, Sgl16719, Sgl79922, Sgl82364 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014719, gene:ENSEOMG00000034427 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0006610 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002530 |
| Apiaceae | Apium graveolens | 1 | Ag10G00277 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711628 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.23.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G11820 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G73440.1, AT4G00140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028898m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1142 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1153 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g03190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.144 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032618 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34058 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1709, BH09.1895, CH09.2037 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309250, gene-QOZ80_4BG0340260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0184310.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007606, gene-QYE76_045197 |
| Poaceae | Oryza coarctata | 2 | Oco07G011620, Oco08G011270 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g45180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G171200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301886, Pt_Chr0301906 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G007900, Chr26G011810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G638700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG053290, gene_TRIDC2BG056180 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G368600.1, TraesCS2B02G385800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427420_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37191 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20130 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.750, evm.TU.LG24.741 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.200, evm.TU.Scaffold_8_RagTag.1532 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8315, nbisL1-mrna-8392 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20249 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15153 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003613 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9448 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22748 |
| Salicaceae | Populus euphratica | 1 | populus_peu31816 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645741 |
| Solanaceae | Solanum chilense | 1 | SOLCI003456900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008422 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25304_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2629 |
| Zosteraceae | Zostera marina | 1 | Zosma02g16700.v3.1 |