halophFGD

Basic Information

Locus ID: Ag10G00267

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the glycosyltransferase 8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	73133947	73142611	+	Ag10G00267

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.27	76,706.15 Da	34.57	85.68	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06429	GT8_like_1	365	661	2.28545E-122	-
Pfam	PF01501	Glycosyl transferase family 8	334	647	2.6E-95	IPR002495
SUPERFAMILY	SSF53448	Nucleotide-diphospho-sugar transferases	365	671	1.63E-68	IPR029044
Gene3D	G3DSA:3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	367	665	1.1E-43	IPR029044
Coils	Coil	Coil	237	264	-	-

Gene Ontology

Molecular Function:

GO:0016757 (glycosyltransferase activity)

KEGG Pathway

KO Term:

K13648 (alpha-1,4-galacturonosyltransferase [EC:2.4.1.43])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism)

Reaction:

R05191 (n UDP-D-galacturonate <=> n UDP + Pectin)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61130.1	galacturonosyltransferase 1. Encodes a protein with putative galacturonosyltransferase activity.
RefSeq	XP_017247665.1	PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LE59	Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana OX=3702 GN=GAUT1 PE=1 SV=1
TrEMBL	A0A165A0L6	Hexosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015917 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	29.750389	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	28.097507	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	32.447346	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	30.922808	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	30.979326	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	28.376692	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	24.066244	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	22.632305	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	59.000103	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	52.753487	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	60.703003	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	51.254807	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	46.591667	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.994865	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	128.682465	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	120.298004	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	118.781006	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	77.293777	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	61.214527	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	80.695877	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	76.315186	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	76.97123	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	104.169243	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	83.4832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	75.08387	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	81.905609	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	68.451759	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	60.701897	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	74.428062	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.744008		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.172987		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.977231		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.239308		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	31.426247		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.125242		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.883465		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.024007		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	9.438491		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	42.701195	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	27.211426	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.7442	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	45.118	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	31.857683	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.028833	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	53.796906	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	54.435303	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	58.289619	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11851, jg21753, jg24728, jg38531, jg5793
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1376, gene_7383
Amaranthaceae	Atriplex hortensis	3	Ah009388, Ah017237, Ah023114
Amaranthaceae	Beta vulgaris	2	BVRB_8g184210, BVRB_9g212470
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg10912, Sbi_jg10914, Sbi_jg25778, Sbi_jg4385 ... Sbi_jg47422, Sbi_jg49300, Sbi_jg9605
Amaranthaceae	Salicornia europaea	4	Seu_jg19038, Seu_jg21664, Seu_jg21665, Seu_jg5806
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000340, GOSA_00012461, GOSA_00018757
Amaranthaceae	Suaeda glauca	6	Sgl11211, Sgl16606, Sgl41771, Sgl46571, Sgl55604, Sgl60818
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008981, gene:ENSEOMG00000016275 ... gene:ENSEOMG00000016387, gene:ENSEOMG00000030257, gene:ENSEOMG00000033053, gene:ENSEOMG00000036783, gene:ENSEOMG00000045706, gene:ENSEOMG00000047046, gene:ENSEOMG00000051576
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0005700, CQ.Regalona.r1.2BG0023960 ... CQ.Regalona.r1.5AG0027880, CQ.Regalona.r1.7BG0001710, CQ.Regalona.r1.8BG0000060, CQ.Regalona.r1.9AG0001460
Anacardiaceae	Pistacia vera	4	pistato.v30003430, pistato.v30025850, pistato.v30066330 ... pistato.v30108770
Apiaceae	Apium graveolens	3	Ag10G00267, Ag1G01711, Ag5G01116
Arecaceae	Cocos nucifera	7	COCNU_01G013080, COCNU_07G008710, COCNU_09G000910 ... COCNU_11G011170, scaffold000650G000020, scaffold016239G000100, scaffold045783G000010
Arecaceae	Phoenix dactylifera	9	gene-LOC103696144, gene-LOC103696960, gene-LOC103701120 ... gene-LOC103701177, gene-LOC103702363, gene-LOC103702796, gene-LOC103710668, gene-LOC103720912, gene-LOC103720921
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.1144.V1.1, AsparagusV1_01.1145.V1.1 ... AsparagusV1_01.3287.V1.1, AsparagusV1_01.512.V1.1, AsparagusV1_04.1381.V1.1, AsparagusV1_04.600.V1.1, AsparagusV1_05.2164.V1.1, AsparagusV1_05.734.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G26352, Ftri13G02954, Ftri5G18793, Ftri7G22982 ... FtriNA19628, FtriNA24316
Brassicaceae	Arabidopsis thaliana	4	AT2G46480.1, AT3G61130.1, AT4G38270.1, AT5G47780.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000819m.g.v1.0, Thhalv10005820m.g.v1.0 ... Thhalv10024734m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g12520.v2.2, Sp4g28480.v2.2, Sp5g02250.v2.2 ... Sp7g37450.v2.2
Brassicaceae	Brassica nigra	6	BniB02g064450.2N, BniB02g089750.2N, BniB04g009990.2N ... BniB06g062190.2N, BniB08g075230.2N, BniS06172g250.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0452, Ceq02G1435, Ceq07G1819
Casuarinaceae	Casuarina glauca	5	Cgl02G0481, Cgl02G1479, Cgl07G1975, Cgl07G1982, Cgl07G2023
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno01g04630, gene.Cymno02g10290, gene.Cymno06g09670 ... gene.Cymno14g07660, gene.Cymno18g02790
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g03430, gene.Thate02g03440, gene.Thate05g09190 ... gene.Thate06g06710, gene.Thate09g19100
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3602, nbisL1-mrna-7766
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.982, evm.TU.LG08.425, evm.TU.LG12.1305
Plantaginaceae	Plantago ovata	3	Pov_00006118, Pov_00007056, Pov_00027481
Plumbaginaceae	Limonium bicolor	3	Lb2G10516, Lb4G21745, Lb4G22952
Poaceae	Echinochloa crus-galli	17	AH01.990, AH03.2339, AH03.2713, AH06.3035, AH08.1105 ... AH08.1932, BH03.2470, BH03.2856, BH06.2822, BH08.1097, BH08.2025, CH01.1181, CH03.2664, CH03.3062, CH08.1208, CH08.2203, Contig181.188
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_3AG0220960, gene-QOZ80_3BG0266120 ... gene-QOZ80_6AG0528440, gene-QOZ80_6AG0539030, gene-QOZ80_6AG0551370, gene-QOZ80_6BG0482450, gene-QOZ80_6BG0492360, gene-QOZ80_6BG0504960, gene-QOZ80_8AG0625950, gene-QOZ80_8BG0653990
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0083170.1, HORVU.MOREX.r3.4HG0334870.1 ... HORVU.MOREX.r3.5HG0489550.1, HORVU.MOREX.r3.5HG0498770.1, HORVU.MOREX.r3.7HG0677820.1, HORVU.MOREX.r3.7HG0751510.1
Poaceae	Lolium multiflorum	9	gene-QYE76_006047, gene-QYE76_006813, gene-QYE76_012642 ... gene-QYE76_024741, gene-QYE76_029813, gene-QYE76_037006, gene-QYE76_037081, gene-QYE76_062569, gene-QYE76_062571
Poaceae	Oryza coarctata	12	Oco11G017080, Oco12G017270, Oco12G017880, Oco15G006290 ... Oco15G011830, Oco16G006130, Oco16G010740, Oco17G007490, Oco17G010220, Oco18G007780, Oco18G010200, Oco19G002830
Poaceae	Oryza sativa	8	LOC_Os06g49810.1, LOC_Os06g51160.1, LOC_Os08g23780.1 ... LOC_Os08g38740.1, LOC_Os09g30280.1, LOC_Os09g36180.1, LOC_Os09g36190.1, LOC_Os10g21890.2
Poaceae	Paspalum vaginatum	6	gene-BS78_01G120600, gene-BS78_02G219200 ... gene-BS78_02G252500, gene-BS78_07G176500, gene-BS78_10G185900, gene-BS78_10G216500
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0104938, Pt_Chr0203653, Pt_Chr0206882, Pt_Chr0207175 ... Pt_Chr0401854, Pt_Chr0404015, Pt_Chr0700005, Pt_Chr0700993, Pt_Chr0701642, Pt_Chr0701673
Poaceae	Sporobolus alterniflorus	14	Chr01G008040, Chr0G007290, Chr0G021810, Chr10G007770 ... Chr10G022450, Chr12G029350, Chr14G010370, Chr14G015950, Chr14G015960, Chr14G015970, Chr16G012540, Chr17G011860, Chr21G010510, Chr21G014990
Poaceae	Thinopyrum elongatum	7	Tel1E01G605700, Tel4E01G056800, Tel5E01G410300 ... Tel5E01G508500, Tel7E01G424000, Tel7E01G956900, Tel7E01G957700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG054490, gene_TRIDC1BG062360 ... gene_TRIDC4AG043890, gene_TRIDC4BG004900, gene_TRIDC4BG020170, gene_TRIDC5AG040030, gene_TRIDC5AG047340, gene_TRIDC5BG042430, gene_TRIDC5BG051060, gene_TRIDC7AG030510, gene_TRIDC7AG076420, gene_TRIDC7BG021400
Poaceae	Triticum aestivum	18	TraesCS1A02G370800.2, TraesCS1B02G390000.1 ... TraesCS1D02G376900.2, TraesCS4A02G283700.1, TraesCS4B02G029400.1, TraesCS4D02G026900.1, TraesCS5A02G256400.1, TraesCS5A02G319800.1, TraesCS5B02G255700.1, TraesCS5B02G320100.2, TraesCS5D02G264700.1, TraesCS5D02G325800.2, TraesCS7A02G239100.1, TraesCS7A02G550200.1, TraesCS7B02G134900.2, TraesCS7B02G473600.1, TraesCS7D02G237000.1, TraesCSU02G105800.2
Poaceae	Zea mays	8	Zm00001eb053500_P001, Zm00001eb101530_P002 ... Zm00001eb103470_P001, Zm00001eb170740_P001, Zm00001eb217140_P002, Zm00001eb228580_P003, Zm00001eb239160_P001, Zm00001eb319550_P001
Poaceae	Zoysia japonica	3	nbis-gene-3390, nbis-gene-35292, nbis-gene-46575
Poaceae	Zoysia macrostachya	4	Zma_g3043, Zma_g32212, Zma_g32751, Zma_g33448
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.2036, evm.TU.LG04.1919, evm.TU.LG04.2367 ... evm.TU.LG06.418, evm.TU.LG07.1556, evm.TU.LG14.1217, evm.TU.LG15.1697, evm.TU.LG19.1197, evm.TU.LG24.1201
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g11470, gene.Posoc02g11480, gene.Posoc03g09130 ... gene.Posoc07g07320
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.26, evm.TU.Scaffold_5_RagTag.343 ... evm.TU.Scaffold_7_RagTag.1414
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10914, nbisL1-mrna-20, nbisL1-mrna-20079 ... nbisL1-mrna-20212, nbisL1-mrna-53, nbisL1-mrna-9907
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13551, nbisL1-mrna-15725, nbisL1-mrna-4756
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10472, nbisL1-mrna-13361, nbisL1-mrna-7121 ... nbisL1-mrna-7122, nbisL1-mrna-9296
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.240, evm.TU.utg000006l.528 ... evm.TU.utg000009l.1223, evm.TU.utg000018l.759
Rhizophoraceae	Kandelia obovata	4	Maker00003509, Maker00005482, Maker00011722, Maker00013386
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14079, nbisL1-mrna-3242, nbisL1-mrna-9062 ... nbisL1-mrna-9241
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11251, nbisL1-mrna-12100, nbisL1-mrna-24141 ... nbisL1-mrna-6971
Salicaceae	Populus euphratica	6	populus_peu08426, populus_peu10498, populus_peu16911 ... populus_peu26567, populus_peu27806, populus_peu31744
Solanaceae	Lycium barbarum	4	gene-LOC132599398, gene-LOC132616213, gene-LOC132632977 ... gene-LOC132645634
Solanaceae	Solanum chilense	4	SOLCI002559700, SOLCI003417600, SOLCI004079300 ... SOLCI005586000
Solanaceae	Solanum pennellii	4	gene-LOC107002634, gene-LOC107006505, gene-LOC107007965 ... gene-LOC107017714
Tamaricaceae	Reaumuria soongarica	4	STRG.29206_chr11_+, STRG.8587_chr06_-, gene_11360, gene_2413
Tamaricaceae	Tamarix chinensis	4	TC03G2722, TC08G0010, TC09G2127, TC12G0838
Zosteraceae	Zostera marina	5	Zosma02g06360.v3.1, Zosma04g21470.v3.1, Zosma05g21800.v3.1 ... Zosma05g23600.v3.1, Zosma06g05150.v3.1