Basic Information
Locus ID:
Ag10G00264
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 72384745 | 72395204 | + | Ag10G00264 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 47,296.49 Da | 34.04 | 89.01 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 79 | 113 | 6.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 322 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 389 | 427 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 79 | 431 | 3.48E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 336 | 435 | 5.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 152 | 9.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 184 | 335 | 6.4E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 233 | 272 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 428 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 75 | 114 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 7.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 230 | 79.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 324 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 324 | 12.894674 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 82 | 116 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 82 | 116 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 388 | 435 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 388 | 435 | 8.67045 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 309 | 323 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 70 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00090.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017248051.1 | PREDICTED: transducin beta-like protein 2 [Daucus carota subsp. sativus] | 0 |
| Q9Y4P3 | Transducin beta-like protein 2 OS=Homo sapiens OX=9606 GN=TBL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D3D2J0 | Transducin beta-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.688585 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.040588 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.399206 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.633732 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.356264 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.515091 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.37414 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.27545 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 29.698805 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.521826 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.005287 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 37.147369 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.835566 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.955284 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.566032 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.971706 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 32.648708 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.571205 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.522005 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.873423 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.748405 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.160576 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.821102 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.670082 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.953798 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.15579 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.388067 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.995407 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.411943 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.160308 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.985246 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.55898 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.447731 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.291924 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.379706 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.403869 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.720686 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.88973 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.689819 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.634803 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.333882 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.149969 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.016685 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.956671 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.008598 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.65954 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.471598 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.60848 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.78545 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.742405 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29252 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23224 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4315, Sbi_jg49510 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000291, GOSA_00000292 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11276, Sgl16670 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014824, gene:ENSEOMG00000035254 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006320, CQ.Regalona.r1.2BG0023410 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30000790, pistato.v30002990 |
| Apiaceae | Apium graveolens | 1 | Ag10G00264 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G014190, scaffold045784G000010 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1137.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05024 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028676m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042270.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0490, Ceq02G0502 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0522 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05090 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0002s00077.v1.0, Dusal.0466s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2546 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.184 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014905 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10583, Lb2G15076 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.638, BH01.86, CH09.3281 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0207520, gene-QOZ80_3BG0252580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0537090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_059808 |
| Poaceae | Oryza coarctata | 3 | Oco05G029440, Oco06G030430, Oco15G009250 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g64110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G003200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106798, Pt_Chr0106866 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000090, Chr04G032940, Chr07G031910, Chr12G038240 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G884600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG047950, gene_TRIDC5BG083110 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G316800.1, TraesCS5B02G562100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb065090_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15697, nbis-gene-16803 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16, Zma_g2322 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2378 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g07250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.353 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21704 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2805 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7149 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.330 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009925 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6853 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12686 |
| Salicaceae | Populus euphratica | 2 | populus_peu27845, populus_peu31778 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645704 |
| Solanaceae | Solanum chilense | 1 | SOLCI005187200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003232 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25250_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2668 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05140.v3.1 |