Basic Information
Locus ID:
Ag10G00216
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SAE1A
Description:
SUMO-activating enzyme subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 64599098 | 64603270 | - | Ag10G00216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 35,404.08 Da | 42.00 | 91.62 | -0.09 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24940.1 | SUMO-activating enzyme 1A. Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. | 0 |
| RefSeq | XP_017249072.1 | PREDICTED: SUMO-activating enzyme subunit 1A-like [Daucus carota subsp. sativus] | 0 |
| Q8VY78 | SUMO-activating enzyme subunit 1A OS=Arabidopsis thaliana OX=3702 GN=SAE1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164XG36 | ThiF domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016379 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.787294 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.214809 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.321325 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.986624 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.939569 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.581091 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.581669 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.052395 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 68.428391 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 66.252151 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.267075 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 74.573906 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 72.255501 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.31855 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.879271 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 23.392773 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.225243 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.137539 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.656553 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.50972 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.689098 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.676365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.558908 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.408417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.398006 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.743826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.838757 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.962408 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.003889 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.431145 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.978958 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.916412 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.06961 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.983419 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.45025 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.172526 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.712566 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.854589 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 30.202984 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.675129 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.089527 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.988388 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.959658 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.464653 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.174564 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 42.628025 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 32.904408 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 60.529827 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 56.459393 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 60.4911 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25603 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14000 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034344 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g035030, BVRB_9g209420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20565, Sbi_jg23199 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17031 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009150 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63477, Sgl67954 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018279, gene:ENSEOMG00000020553 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013170, CQ.Regalona.r1.2BG0015110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012020 |
| Apiaceae | Apium graveolens | 1 | Ag10G00216 |
| Arecaceae | Cocos nucifera | 1 | scaffold004463G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721214 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1093.V1.1, AsparagusV1_04.2687.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G13229 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G24940.1, AT5G50580.2, AT5G50680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025730m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g12760.v2.2, Sp7g22920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g012940.2N, BniB05g012320.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2022 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2195 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g03840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0039s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate02g02420, gene.Thate02g16040, gene.Thate03g11920 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11494 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.638 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041575 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27198, Lb8G35781 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1306, BH04.1305, CH04.1489 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298650, gene-QOZ80_4BG0329350 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0233390.1, HORVU.MOREX.r3.7HG0719070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042709 |
| Poaceae | Oryza coarctata | 2 | Oco21G005960, Oco22G007000 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g30410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G142000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303654, Pt_Chr0303663 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G000400, Chr25G000330, Chr30G000030 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G158500, Tel7E01G634000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG010810, gene_TRIDC3BG014690 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G090000.1, TraesCS3B02G105300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb169400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23251, nbis-gene-6250 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20730, Zma_g22275 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2782 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g12850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1145, evm.TU.Scaffold_4_RagTag.342 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12342, nbisL1-mrna-29033 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18698 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12723, nbisL1-mrna-1964 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.218, evm.TU.utg000010l.215 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000180, Maker00008509 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-650 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8796 |
| Salicaceae | Populus euphratica | 2 | populus_peu28884, populus_peu30282 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601947, gene-LOC132632460 |
| Solanaceae | Solanum chilense | 2 | SOLCI004215400, SOLCI004571100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012363, gene-LOC107021642 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19825_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2647 |
| Zosteraceae | Zostera marina | 1 | Zosma04g14180.v3.1 |