halophFGD

Basic Information

Locus ID: Ag10G00202

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Zinc finger CCCH domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	63554144	63557244	-	Ag10G00202

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.58	48,052.50 Da	29.47	76.18	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	271	302	9.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	149	184	0.013	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	307	341	0.0029	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	133	433	2.66E-43	IPR036322
SUPERFAMILY	SSF90229	CCCH zinc finger	114	139	4.45E-6	IPR036855
Gene3D	G3DSA:2.130.10.10	-	138	232	6.4E-8	IPR015943
Gene3D	G3DSA:3.30.1370.210	-	25	137	6.1E-9	-
Gene3D	G3DSA:2.130.10.10	-	234	438	3.2E-35	IPR015943
SMART	SM00320	WD40_4	348	389	53.0	IPR001680
SMART	SM00320	WD40_4	305	342	1.6E-4	IPR001680
SMART	SM00320	WD40_4	145	184	5.0E-4	IPR001680
SMART	SM00320	WD40_4	224	262	97.0	IPR001680
SMART	SM00356	c3hfinal6	114	140	7.7E-6	IPR000571
SMART	SM00356	c3hfinal6	27	50	0.0024	IPR000571
SMART	SM00320	WD40_4	392	429	150.0	IPR001680
SMART	SM00320	WD40_4	265	302	4.0E-6	IPR001680
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	25	51	12.370704	IPR000571
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	152	184	9.414692	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	272	311	13.750016	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	152	193	11.310488	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	312	351	9.071468	IPR001680
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	114	141	13.657011	IPR000571
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	272	305	10.574686	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	289	303	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	171	185	2.6E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	289	303	2.6E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	329	343	2.6E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	87	103	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	76	103	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10260 (F-box and WD-40 domain protein 7)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25440.1	zinc finger WD40 repeat protein 1.
RefSeq	XP_017243634.1	PREDICTED: zinc finger CCCH domain-containing protein 48-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNZ2	Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1
TrEMBL	A0A164ZYV4	Zinc finger CCCH domain-containing protein 48-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016000 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	34.001072	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.519743	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	21.481932	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	25.120625	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	24.222851	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	24.851139	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	25.272526	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	25.283234	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	27.112383	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	27.818127	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	27.718315	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.046671	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	27.546036	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.949644	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.040211	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.081782	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.678458	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.108164	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.208382	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	23.107336	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	22.507334	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.747673	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.433516	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.019712	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.890331	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.522287	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.181479	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.922859	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.034534	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	13.784929		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.833899		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	15.998713		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	25.474405		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.315176		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	22.243286		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.12309		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.606103		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.086379		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.137727	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	16.86043	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.270181	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	24.983444	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	22.954214	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	21.058054	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	20.721838	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.353859	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	20.659235	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	22.550371	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	30.02739	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.0807	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10154, jg14043, jg2340, jg29301
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1388, gene_3174
Amaranthaceae	Atriplex hortensis	2	Ah018984, Ah031355
Amaranthaceae	Beta vulgaris	2	BVRB_8g191380, BVRB_8g191390
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15485, Sbi_jg56296
Amaranthaceae	Salicornia europaea	1	Seu_jg26761
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006608, GOSA_00008943
Amaranthaceae	Suaeda glauca	4	Sgl02069, Sgl07222, Sgl74130, Sgl77645
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000705, gene:ENSEOMG00000004802 ... gene:ENSEOMG00000028815, gene:ENSEOMG00000040014, gene:ENSEOMG00000046367
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0002180, CQ.Regalona.r1.3BG0002300 ... CQ.Regalona.r1.7AG0021940, CQ.Regalona.r1.7BG0024510
Anacardiaceae	Pistacia vera	2	pistato.v30003610, pistato.v30182120
Apiaceae	Apium graveolens	4	Ag10G00202, Ag2G01960, Ag4G01742, Ag8G00755
Arecaceae	Cocos nucifera	2	COCNU_07G007240, scaffold000778G000030
Arecaceae	Phoenix dactylifera	1	gene-LOC103711123
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3628.V1.1, AsparagusV1_04.2108.V1.1 ... AsparagusV1_04.2986.V1.1, AsparagusV1_04.2990.V1.1, AsparagusV1_08.2958.V1.1, AsparagusV1_09.778.V1.1, AsparagusV1_10.997.V1.1, AsparagusV1_10.998.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G31744, Ftri8G33145, Ftri9G00006, FtriNA05352
Brassicaceae	Arabidopsis thaliana	4	AT4G25440.1, AT5G40880.1, AT5G49200.1, AT5G51980.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10013582m.g.v1.0, Thhalv10025269m.g.v1.0 ... Thhalv10027743m.g.v1.0, Thhalv10027745m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g14230.v2.2, Sp7g01600.v2.2, Sp7g23490.v2.2
Brassicaceae	Brassica nigra	8	BniB01g026530.2N, BniB01g026590.2N, BniB02g029520.2N ... BniB02g029960.2N, BniB03g040680.2N, BniB03g053290.2N, BniB05g011810.2N, BniB08g017560.2N
Casuarinaceae	Casuarina equisetifolia	16	Ceq01G1037, Ceq01G1048, Ceq01G1534, Ceq02G1793, Ceq02G2070 ... Ceq04G1031, Ceq04G1039, Ceq04G1042, Ceq04G1051, Ceq05G2127, Ceq08G1499, Ceq08G1617, Ceq08G1639, Ceq08G1643, Ceq08G1752, Ceq09G1260
Casuarinaceae	Casuarina glauca	21	Cgl01G1150, Cgl01G1209, Cgl01G1220, Cgl01G1699, Cgl02G1853 ... Cgl02G1865, Cgl02G2141, Cgl04G1117, Cgl04G1171, Cgl04G1180, Cgl05G2188, Cgl05G2190, Cgl05G2209, Cgl08G1478, Cgl08G1531, Cgl08G1656, Cgl08G1680, Cgl08G1683, Cgl08G1690, Cgl08G1788, Cgl09G1348
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno14g01870, gene.Cymno14g01880
Dunaliellaceae	Dunaliella salina	1	Dusal.0698s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g11440, gene.Thate08g03670, gene.Thate08g03720
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2214, evm.TU.LG04.955, evm.TU.LG04.961 ... evm.TU.LG04.963, evm.TU.LG04.964
Plantaginaceae	Plantago ovata	5	Pov_00019507, Pov_00028600, Pov_00028769, Pov_00035026 ... Pov_00040895
Plumbaginaceae	Limonium bicolor	2	Lb1G04398, Lb1G04431
Poaceae	Echinochloa crus-galli	9	AH01.5287, AH02.353, AH05.3464, AH07.2993, BH02.379 ... BH07.2816, CH01.5523, CH02.418, CH07.2896
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1BG0061370, gene-QOZ80_1BG0061390 ... gene-QOZ80_2AG0140780, gene-QOZ80_2BG0196390
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0236950.1, HORVU.MOREX.r3.6HG0603760.2 ... HORVU.MOREX.r3.4HG0407530.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_000717, gene-QYE76_008723, gene-QYE76_024346 ... gene-QYE76_048188, gene-QYE76_050198, gene-QYE76_050733, gene-QYE76_068993, gene-QYE76_070820
Poaceae	Oryza coarctata	6	Oco01G003770, Oco02G003840, Oco03G018100, Oco04G018850 ... Oco05G002780, Oco06G002760
Poaceae	Oryza sativa	5	LOC_Os01g09252.1, LOC_Os02g45480.1, LOC_Os03g05210.1 ... LOC_Os03g05250.1, LOC_Os04g48375.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G034600, gene-BS78_04G240500
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100064, Pt_Chr0100084, Pt_Chr0200021, Pt_Chr0203712 ... Pt_Chr0206594, Pt_Chr0403282, Pt_Chr0405571, Pt_Chr0603331, Pt_Chr0700307
Poaceae	Sporobolus alterniflorus	7	Chr02G020610, Chr03G006120, Chr03G006130, Chr03G006140 ... Chr06G005140, Chr09G023570, Chr15G006720
Poaceae	Thinopyrum elongatum	3	Tel3E01G189800, Tel4E01G515900, Tel6E01G478600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG013470, gene_TRIDC3BG018020 ... gene_TRIDC4AG055630, gene_TRIDC4BG052810, gene_TRIDC6AG039630, gene_TRIDC6BG046540
Poaceae	Triticum aestivum	8	TraesCS3A02G109600.1, TraesCS3D02G111400.1 ... TraesCS4A02G410400.1.cds1, TraesCS4B02G310500.1.cds1, TraesCS4D02G308400.1.cds1, TraesCS6A02G257200.1, TraesCS6B02G267900.1, TraesCS6D02G238400.3
Poaceae	Zea mays	3	Zm00001eb088450_P001, Zm00001eb121510_P001 ... Zm00001eb250580_P003
Poaceae	Zoysia japonica	5	nbis-gene-22274, nbis-gene-36001, nbis-gene-6562 ... nbis-gene-6565, nbis-gene-9161
Poaceae	Zoysia macrostachya	4	Zma_g10203, Zma_g10204, Zma_g14121, Zma_g16871
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.578, evm.TU.LG10.1251, evm.TU.LG11.1581 ... evm.TU.LG12.1152, evm.TU.LG19.1212, evm.TU.LG24.1214, evm.TU.LG25.760, evm.TU.LG26.856
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g07270
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1326, evm.TU.Scaffold_4_RagTag.173 ... evm.TU.Scaffold_14_RagTag.542, evm.TU.Scaffold_1_RagTag.1170, evm.TU.Scaffold_2_RagTag.1165
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12632, nbisL1-mrna-17811, nbisL1-mrna-29176 ... nbisL1-mrna-6450
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12959, nbisL1-mrna-16215, nbisL1-mrna-1726 ... nbisL1-mrna-6824
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18829, nbisL1-mrna-2117, nbisL1-mrna-8204 ... nbisL1-mrna-8206
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000007l.38, add.evm.TU.utg000010l.145 ... evm.TU.utg000008l.104, evm.TU.utg000016l.804
Rhizophoraceae	Kandelia obovata	3	Maker00000881, Maker00009084, Maker00017327
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-1044, nbisL1-mrna-10988, nbisL1-mrna-12431 ... nbisL1-mrna-23325, nbisL1-mrna-23326, nbisL1-mrna-2383
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10569, nbisL1-mrna-13369, nbisL1-mrna-20635 ... nbisL1-mrna-5561, nbisL1-mrna-6234
Salicaceae	Populus euphratica	4	populus_peu27762, populus_peu29225, populus_peu30584 ... populus_peu34079
Solanaceae	Lycium barbarum	1	gene-LOC132631818
Solanaceae	Solanum pennellii	1	gene-LOC107015414
Tamaricaceae	Reaumuria soongarica	3	gene_15775, gene_15850, gene_5194
Tamaricaceae	Tamarix chinensis	5	TC06G1729, TC09G2144, TC09G2145, TC09G2148, TC09G2149
Zosteraceae	Zostera marina	1	Zosma03g26430.v3.1