Basic Information
Locus ID:
Ag10G00172
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 55431936 | 55437000 | + | Ag10G00172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 42,493.89 Da | 47.03 | 95.20 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 234 | 278 | 9.37121E-19 | - |
| Pfam | PF13639 | Ring finger domain | 234 | 276 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 284 | 1.82E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | 3.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 235 | 275 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 276 | 12.813844 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47990.1 | SUGAR-INSENSITIVE 3. | 0 |
| RefSeq | XP_017227861.1 | PREDICTED: E3 ubiquitin-protein ligase SIS3 [Daucus carota subsp. sativus] | 0 |
| Q8GYT9 | E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J5BHG5 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_023838 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.883879 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.171574 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.416689 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.017273 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.071539 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.701479 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.85537 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.700537 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.2764 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.162073 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.764824 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 37.32906 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.462248 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.563055 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.600622 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.778177 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.802414 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.267845 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.695393 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.865629 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.737413 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.144958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.686205 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.058193 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.56008 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.069223 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.560207 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.397282 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.740574 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 20.270563 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.844921 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 25.796331 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 35.817528 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 25.728777 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 32.494965 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.621996 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.039654 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.286322 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.239229 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.090728 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.839116 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.896412 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.518675 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.788151 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.658617 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.905111 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.847002 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.230606 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.081141 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.477743 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13050, jg18741, jg18742, jg25850 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13663 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021560 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30515, Sbi_jg58730 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28599 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55240, Sgl60500 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006380, gene:ENSEOMG00000021897 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0024320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139080 |
| Apiaceae | Apium graveolens | 2 | Ag10G00172, Ag3G00721 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G009850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701980 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.615.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G09600, Ftri2G07990, Ftri9G34091 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G47990.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010583m.g.v1.0, Thhalv10010884m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g25980.v2.2, Sp5g13990.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g000080.2N, BniB05g052440.2N, BniB06g024170.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2097 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04900 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.769 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G26151, Lb5G26796 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.1945, BH02.2001, BH05.3048, CH02.2158 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0409030 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0000050.1, HORVU.MOREX.r3.1HG0015120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_008371, gene-QYE76_017078, gene-QYE76_037703 |
| Poaceae | Oryza coarctata | 2 | Oco09G002170, Oco10G002170 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g05280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G169200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0501244 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G018000, Chr18G003320, Chr22G017230 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G003200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG000550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G002000.1, TraesCS1B02G000900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb162790_P001, Zm00001eb341990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48829 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26229 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.927, evm.TU.LG09.1042 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g18820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1011, evm.TU.Scaffold_4_RagTag.479 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14691, nbisL1-mrna-28882 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11821, nbisL1-mrna-13639 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12574 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.115, evm.TU.utg000010l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008844 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14597, nbisL1-mrna-752 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1469, nbisL1-mrna-8649 |
| Salicaceae | Populus euphratica | 2 | populus_peu28624, populus_peu30081 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601339, gene-LOC132632782 |
| Solanaceae | Solanum chilense | 2 | SOLCI004193400, SOLCI006623500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012192, gene-LOC107023663 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11222 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2425 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26050.v3.1 |