Basic Information
Locus ID:
Ag10G00145
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ethylene-responsive protein kinase Le-CTR1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 44718321 | 44720690 | + | Ag10G00145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 10,465.00 Da | 65.59 | 64.00 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01066 | CDP-alcohol phosphatidyltransferase | 6 | 39 | 1.4E-6 | IPR000462 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 47 | 87 | 8.32E-9 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 44 | 90 | 1.2E-7 | - |
| Gene3D | G3DSA:1.20.120.1760 | - | 1 | 42 | 3.3E-6 | IPR043130 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 90 | 8.739772 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73660.1 | protein tyrosine kinase family protein. Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. | 0 |
| RefSeq | XP_028070123.1 | serine/threonine-protein kinase EDR1-like [Camellia sinensis] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | B9T2M6 | Map3k delta-1 protein kinase, putative OS=Ricinus communis OX=3988 GN=RCOM_0171190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.546862 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.683293 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.071043 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.316999 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.816544 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.821852 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.084588 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.727944 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.262671 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.479002 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.576488 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.429415 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.305441 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.671753 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.683168 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.856085 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.975826 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.476168 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.008425 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.493715 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.182279 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.146589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.3284 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.278371 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.79248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.714465 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.775582 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.032382 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.085353 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.116728 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 24.458504 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.885004 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.444184 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.040829 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.64408 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.99748 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.968211 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.8871 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.032813 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.539857 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.422262 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.961152 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.873593 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.609457 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.711962 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.877937 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.94698 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.263424 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.017403 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.472002 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26134, jg3022, jg30369, jg30370 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10664, gene_26690 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030801 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12237, Sbi_jg47204 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21477 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020447, GOSA_00023586 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl40328, Sgl44713, Sgl49476, Sgl55464, Sgl56106, Sgl61439 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007989, gene:ENSEOMG00000034535 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0019290, CQ.Regalona.r1.7BG0021910 |
| Apiaceae | Apium graveolens | 5 | Ag10G00145, Ag5G00028, Ag6G00675, Ag6G00677, Ag6G01973 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012610 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710283, gene-LOC103710868 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2394.V1.1, AsparagusV1_08.1440.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G30633, Ftri8G19658 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G68000.1, AT4G38570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019092m.g.v1.0, Thhalv10026160m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g23020.v2.2, Sp7g37200.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g015730.2N, BniB03g042220.2N, BniB03g045360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1713 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1858 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0370s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.320 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001666 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06765, Lb1G06767, Lb6G29872 |
| Poaceae | Echinochloa crus-galli | 3 | BH06.2426, BH09.909, CH09.1011 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0350740, gene-QOZ80_6AG0547720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046401 |
| Poaceae | Oryza coarctata | 3 | Oco03G001320, Oco04G001210, Oco09G006750 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g03110.2, LOC_Os06g29650.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G077100, gene-BS78_08G147900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307438 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G031600, Chr05G009460, Chr10G019960, Chr11G002700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G791500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG071620 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G469200.1, TraesCS2B02G492100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb274200_P001, Zm00001eb389940_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44822, nbis-gene-7811 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19608, Zma_g21188 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.318, evm.TU.LG17.314 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.235 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19482 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18399, nbisL1-mrna-511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7053 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.141 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010771 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8104 |
| Salicaceae | Populus euphratica | 2 | populus_peu08696, populus_peu36655 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609570 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027011 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5462_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2195 |
| Zosteraceae | Zostera marina | 1 | Zosma03g35700.v3.1 |