Basic Information
Locus ID:
Ag10G00126
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ig-like domain from next to BRCA1 gene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 39737976 | 39741738 | + | Ag10G00126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 88,311.80 Da | 41.27 | 79.81 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14319 | UBA_NBR1 | 717 | 755 | 5.59732E-12 | - |
| CDD | cd14319 | UBA_NBR1 | 758 | 796 | 3.9982E-14 | - |
| CDD | cd14947 | NBR1_like | 469 | 581 | 8.58227E-43 | IPR032350 |
| Pfam | PF00569 | Zinc finger, ZZ type | 392 | 427 | 1.2E-8 | IPR000433 |
| Pfam | PF00564 | PB1 domain | 6 | 85 | 1.2E-6 | IPR000270 |
| Pfam | PF16158 | Ig-like domain from next to BRCA1 gene | 479 | 580 | 1.4E-28 | IPR032350 |
| SUPERFAMILY | SSF57850 | RING/U-box | 389 | 441 | 3.65E-13 | - |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 4 | 87 | 5.33E-11 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 759 | 796 | 3.23E-8 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 713 | 757 | 2.9E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 87 | 4.0E-13 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 758 | 799 | 8.0E-18 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 386 | 456 | 7.1E-12 | IPR043145 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 466 | 583 | 1.6E-28 | IPR013783 |
| SMART | SM00666 | PB1_new | 4 | 88 | 1.1E-8 | IPR000270 |
| SMART | SM00291 | zz_5 | 391 | 433 | 6.8E-6 | IPR000433 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 391 | 438 | 11.735052 | IPR000433 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 4 | 88 | 13.995527 | IPR000270 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 716 | 757 | 9.390174 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 121 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24690.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. | 0 |
| RefSeq | XP_017247468.1 | PREDICTED: protein NBR1 homolog [Daucus carota subsp. sativus] | 0 |
| M1BJF6 | Protein JOKA2 OS=Solanum tuberosum OX=4113 GN=JOKA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZYB4 | Protein NBR1 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 113.662285 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 92.903862 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 103.951385 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 106.42984 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 108.687737 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 102.250237 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 97.080269 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 80.579536 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 96.375816 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 97.133919 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 103.577019 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 111.504578 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 105.937241 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 95.857346 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.220913 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.28569 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.712891 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.662689 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 29.438213 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 36.170181 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 45.109127 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 49.611603 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 59.771122 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 55.343369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 54.165203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 48.059662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 39.625347 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 36.684464 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 42.291458 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 39.49762 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 49.311279 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 41.32106 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 123.154816 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 87.376343 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 100.151619 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 68.548637 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 44.901817 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 55.390575 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 41.949993 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.631695 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 18.912203 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 41.042923 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 46.222401 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 63.407818 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 60.276081 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 37.981049 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 62.740303 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 79.709106 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 95.831467 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 82.317986 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13016, jg25928, jg27525 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13626 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000528 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g118120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30623, Sbi_jg58642 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28506 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014870 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55137, Sgl60389 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007680, gene:ENSEOMG00000023923 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023620, CQ.Regalona.r1.5BG0025110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30139930, pistato.v30141380 |
| Apiaceae | Apium graveolens | 6 | Ag10G00126, Ag2G00242, Ag4G00254, Ag4G00255, Ag5G00713 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G013810, scaffold005094G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697200, gene-LOC103712004 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.1668.V1.1, AsparagusV1_09.1669.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G08727, Ftri1G31289 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024557m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g22680.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g081320.2N, BniB03g012990.2N, BniB05g012530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1898 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2066 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0047s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g22720, gene.Thate09g09360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.666 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00022184, Pov_00022185, Pov_00033787 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23184, Lb4G23185 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4050, AH07.2435, BH07.2248, BH09.1477, CH07.2318 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136020, gene-QOZ80_2BG0191560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0175440.1, HORVU.MOREX.r3.6HG0590780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023397, gene-QYE76_044603 |
| Poaceae | Oryza coarctata | 4 | Oco03G014210, Oco04G014540, Oco07G008550, Oco08G008460 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g38050.1, LOC_Os04g40090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G180800, gene-BS78_06G134100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0204430, Pt_Chr0204491, Pt_Chr0302310, Pt_Chr0302358 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr06G008580, Chr09G012830, Chr12G013110, Chr13G008710 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G586100, Tel6E01G409400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG049050, gene_TRIDC2BG051620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G327000.1, TraesCS2B02G355000.6 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079700_P001, Zm00001eb127620_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18655, nbis-gene-29772, nbis-gene-36883 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13801, Zma_g16598, Zma_g19915 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2423, evm.TU.LG14.1589 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1077, evm.TU.Scaffold_4_RagTag.432 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14753, nbisL1-mrna-28928 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6694, nbisL1-mrna-9528 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12633, nbisL1-mrna-1896 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.279, evm.TU.utg000010l.146 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001490, Maker00008965 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14627, nbisL1-mrna-715 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1425, nbisL1-mrna-8710 |
| Salicaceae | Populus euphratica | 3 | populus_peu28711, populus_peu30137, populus_peu30139 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132601682, gene-LOC132609562, gene-LOC132632592 |
| Solanaceae | Solanum chilense | 2 | SOLCI005419300, SOLCI006063400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014343, gene-LOC107023916 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11193, gene_15993 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2523, TC09G0955 |