halophFGD

Basic Information

Locus ID: Ag10G00070

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	21971800	21972508	+	Ag10G00070

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.90	10,788.02 Da	32.93	91.37	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12796	Ankyrin repeats (3 copies)	20	81	6.1E-8	IPR020683
SUPERFAMILY	SSF48403	Ankyrin repeat	20	86	5.15E-11	IPR036770
Gene3D	G3DSA:1.25.40.20	-	13	90	1.4E-13	IPR036770
SMART	SM00248	ANK_2a	50	79	1.8E-4	IPR002110
ProSiteProfiles	PS50088	Ankyrin repeat profile.	50	82	12.76955	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	50	81	11.665081	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K19044 (E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G57740.1	XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase
RefSeq	XP_017258856.1	PREDICTED: E3 ubiquitin-protein ligase XBAT32 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q6NLQ8	E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1
TrEMBL	A0A5B7C0M9	Putative E3 ubiquitin-protein ligase XBOS32 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_043809 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	33.242996	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	36.136543	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	23.560808	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.00518	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	29.712378	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	25.068562	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	20.6721	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	15.177205	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	46.8633	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	38.051804	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	51.096134	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	46.196251	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	52.092243	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.339642	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	43.690773	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	46.132336	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	61.158344	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	40.74017	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	41.468712	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	29.144369	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	43.007927	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	58.626408	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	48.603764	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	67.797668	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	66.808792	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	46.808971	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	44.671791	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	37.813213	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	56.092529	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.967168		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	43.517506		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	31.407555		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	20.477423		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	29.458498		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	22.263081		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.711933		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.960133		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.954026		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.482758	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.274143	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.635729	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.706795	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	24.883156	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	35.836143	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	36.949551	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.162346	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14018, jg15641, jg2320, jg33121, jg33991
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10845, gene_16110
Amaranthaceae	Atriplex hortensis	4	Ah014845, Ah018937, Ah020886, Ah020888
Amaranthaceae	Beta vulgaris	1	BVRB_8g192200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15542, Sbi_jg24823, Sbi_jg56365, Sbi_jg8691
Amaranthaceae	Salicornia europaea	2	Seu_jg19917, Seu_jg26804
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006565, GOSA_00022232
Amaranthaceae	Suaeda glauca	4	Sgl02028, Sgl07181, Sgl42510, Sgl47240
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003949, gene:ENSEOMG00000009536 ... gene:ENSEOMG00000030442, gene:ENSEOMG00000035201, gene:ENSEOMG00000042441, gene:ENSEOMG00000044404
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0002520, CQ.Regalona.r1.3BG0002650 ... CQ.Regalona.r1.5BG0017860, CQ.Regalona.r1.8AG0017670, CQ.Regalona.r1.8BG0018750
Anacardiaceae	Pistacia vera	2	pistato.v30182440, pistato.v30264420
Apiaceae	Apium graveolens	5	Ag10G00070, Ag10G02628, Ag10G02629, Ag10G02776, Ag2G01985
Arecaceae	Cocos nucifera	6	COCNU_01G004360, COCNU_07G006970, COCNU_08G006480 ... COCNU_08G006490, COCNU_10G005190, COCNU_11G009130
Arecaceae	Phoenix dactylifera	6	gene-LOC103699530, gene-LOC103707121, gene-LOC103710468 ... gene-LOC103711156, gene-LOC103714157, gene-LOC103716708
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2555.V1.1, AsparagusV1_08.401.V1.1 ... AsparagusV1_10.1084.V1.1
Asteraceae	Flaveria trinervia	4	Ftri3G08493, Ftri4G01708, Ftri4G32617, Ftri8G02497
Brassicaceae	Arabidopsis thaliana	2	AT5G07270.1, AT5G57740.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013287m.g.v1.0, Thhalv10013312m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g19420.v2.2, Sp6g35620.v2.2
Brassicaceae	Brassica nigra	4	BniB02g037110.2N, BniB02g053620.2N, BniB05g028470.2N ... BniB05g037360.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2098, Ceq03G1173, Ceq05G0537
Casuarinaceae	Casuarina glauca	3	Cgl02G2171, Cgl03G1280, Cgl05G0569
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g05030, gene.Cymno05g08760, gene.Cymno14g04760
Dunaliellaceae	Dunaliella salina	3	Dusal.0060s00020.v1.0, Dusal.0120s00020.v1.0 ... Dusal.0250s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g12330, gene.Thate04g24770, gene.Thate07g07340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11810
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2698, evm.TU.LG07.407
Plantaginaceae	Plantago ovata	3	Pov_00000667, Pov_00015626, Pov_00040925
Plumbaginaceae	Limonium bicolor	1	Lb4G24381
Poaceae	Echinochloa crus-galli	12	AH01.3149, AH06.482, AH07.3747, AH08.906, BH01.3508 ... BH06.165, BH07.1940, BH07.3571, CH06.154, CH07.3636, CH08.1047, CH09.292
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0114220, gene-QOZ80_2AG0148590 ... gene-QOZ80_2BG0168020, gene-QOZ80_2BG0203970, gene-QOZ80_6AG0507080, gene-QOZ80_6BG0459140, gene-QOZ80_8AG0624260, gene-QOZ80_8BG0651980
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0051110.1, HORVU.MOREX.r3.6HG0623070.1 ... HORVU.MOREX.r3.7HG0643200.1, HORVU.MOREX.r3.7HG0658700.1
Poaceae	Lolium multiflorum	6	gene-QYE76_012144, gene-QYE76_016444, gene-QYE76_026086 ... gene-QYE76_026289, gene-QYE76_032299, gene-QYE76_032308
Poaceae	Oryza coarctata	8	Oco03G023930, Oco04G024470, Oco11G001310, Oco12G001220 ... Oco15G005170, Oco16G004890, Oco19G008370, Oco20G008220
Poaceae	Oryza sativa	4	LOC_Os02g54860.1, LOC_Os06g03800.1, LOC_Os08g15840.5 ... LOC_Os10g37730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G309600, gene-BS78_01G359000 ... gene-BS78_07G100700, gene-BS78_10G021200
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0203812, Pt_Chr0303694, Pt_Chr0401920, Pt_Chr0402814 ... Pt_Chr0503012, Pt_Chr0503018
Poaceae	Sporobolus alterniflorus	14	Chr05G014770, Chr05G017530, Chr06G000630, Chr06G029210 ... Chr09G003030, Chr09G017950, Chr11G024010, Chr13G002140, Chr13G021810, Chr15G001870, Chr15G020400, Chr16G003470, Chr17G003170, Chr29G008820
Poaceae	Thinopyrum elongatum	5	Tel1E01G324900, Tel2E01G982100, Tel6E01G626500 ... Tel7E01G130600, Tel7E01G296500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG028640, gene_TRIDC1BG032970 ... gene_TRIDC6AG052980, gene_TRIDC6BG061580, gene_TRIDC7AG006520, gene_TRIDC7AG017780, gene_TRIDC7BG007140
Poaceae	Triticum aestivum	12	TraesCS1A02G189100.1, TraesCS1B02G196800.1 ... TraesCS1D02G187300.1, TraesCS4A02G429100.1, TraesCS6A02G352300.1, TraesCS6B02G385200.1, TraesCS6D02G335000.2, TraesCS7A02G060700.1, TraesCS7A02G145900.1, TraesCS7B02G048300.1, TraesCS7D02G055500.1, TraesCS7D02G147400.1
Poaceae	Zea mays	5	Zm00001eb021320_P001, Zm00001eb178040_P001 ... Zm00001eb192640_P001, Zm00001eb269490_P002, Zm00001eb378520_P001
Poaceae	Zoysia japonica	6	nbis-gene-34432, nbis-gene-36123, nbis-gene-44701 ... nbis-gene-51169, nbis-gene-51170, nbis-gene-8460
Poaceae	Zoysia macrostachya	5	Zma_g12784, Zma_g14600, Zma_g15541, Zma_g22715, Zma_g31271
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2654, evm.TU.LG11.1603, evm.TU.LG16.1442 ... evm.TU.LG23.879
Posidoniaceae	Posidonia oceanica	10	gene.Posoc01g19400, gene.Posoc01g36140, gene.Posoc02g03990 ... gene.Posoc02g24810, gene.Posoc03g02670, gene.Posoc06g11590, gene.Posoc06g11610, gene.Posoc06g16450, gene.Posoc07g12900, gene.Posoc09g02980
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.211, evm.TU.Scaffold_4_RagTag.147 ... evm.TU.Scaffold_11_RagTag.1356
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12655, nbisL1-mrna-13366, nbisL1-mrna-29198
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15068, nbisL1-mrna-16283, nbisL1-mrna-7227
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12926, nbisL1-mrna-16639, nbisL1-mrna-2137
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.89, evm.TU.utg000010l.353 ... evm.TU.utg000033l.142
Rhizophoraceae	Kandelia obovata	4	Maker00000037, Maker00008459, Maker00008595, Maker00014619
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1060, nbisL1-mrna-16627, nbisL1-mrna-2368
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14598, nbisL1-mrna-20614, nbisL1-mrna-6257
Salicaceae	Populus euphratica	3	populus_peu05515, populus_peu29257, populus_peu30619
Solanaceae	Lycium barbarum	2	gene-LOC132602871, gene-LOC132631864
Solanaceae	Solanum chilense	1	SOLCI006529100
Solanaceae	Solanum pennellii	2	gene-LOC107015481, gene-LOC107026410
Tamaricaceae	Reaumuria soongarica	2	STRG.18817_chr07_-, gene_4140
Tamaricaceae	Tamarix chinensis	3	TC06G1662, TC12G0417, TC12G0418
Zosteraceae	Zostera marina	3	Zosma01g04350.v3.1, Zosma01g35410.v3.1, Zosma03g12500.v3.1