Basic Information
Locus ID:
Ag10G00005
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 968686 | 976368 | + | Ag10G00005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 67,656.40 Da | 54.48 | 71.32 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 561 | 601 | 5.01058E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 560 | 608 | 5.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 525 | 617 | 2.0E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 561 | 616 | 9.627196 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 238 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011073304.1 | uncharacterized protein LOC105158293 isoform X3 [Sesamum indicum] | 0 |
| TrEMBL | A0A5J5BBU1 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_024518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 42.486607 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 29.279556 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.964962 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.024796 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.528334 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.905785 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.084557 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.402205 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.138635 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.231071 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.059345 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.827999 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.672375 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.70166 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.302879 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.534955 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.242954 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.702387 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.530591 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.647947 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.894901 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.190247 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.414063 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.430983 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.715014 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.636969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.236594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.130491 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.854715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.575629 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.159665 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.623094 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.729849 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.680921 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.9443 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.944755 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.093134 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.491538 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.372951 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.51088 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.225035 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.381882 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.267748 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.683086 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.318026 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.644038 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.105593 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.705881 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.140996 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.086923 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18328 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_11178, gene_11179, gene_11180 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015741, Ah039279 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g189480, BVRB_8g191700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011783, gene:ENSEOMG00000033264 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0013600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30130630 |
| Apiaceae | Apium graveolens | 1 | Ag10G00005 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707428 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3430.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G14485, Ftri3G28296, Ftri8G28209, Ftri9G19027 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0430 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0456, Cgl02G0458, Cgl05G2137 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.725 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020104 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18767 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3762, BH07.3586, CH07.3654 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148750, gene-QOZ80_2BG0204130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0623650.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024120, Oco04G024590 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g55090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G304300, gene-BS78_04G304400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202880, Pt_Chr0202900 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000560, Chr09G017820, Chr0G032620, Chr13G002010 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G630200 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G355100.1, TraesCS6B02G387900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb192530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39940, nbis-gene-39941 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14612, Zma_g17318 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19100 |
| Salicaceae | Populus euphratica | 1 | populus_peu04134 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633090 |
| Solanaceae | Solanum chilense | 1 | SOLCI002329900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014525 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15057_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0783 |