Basic Information
Locus ID:
AH09.893
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 21047399 | 21049319 | + | AH09.893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 22,816.31 Da | 27.58 | 86.34 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 12 | 117 | 2.8E-26 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 13 | 125 | 1.49E-34 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 7 | 154 | 6.8E-41 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 17 | 30 | 1.5E-9 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 34 | 52 | 1.5E-9 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 202 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 2.66E-101 |
| RefSeq | XP_039772755.1 | histone deacetylase 9 isoform X7 [Panicum virgatum] | 1.98E-125 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 2.57E-100 | |
| TrEMBL | A0A3L6QCA3 | histone deacetylase OS=Panicum miliaceum OX=4540 GN=C2845_PM15G07460 PE=3 SV=1 | 2.62E-123 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology