Basic Information
Locus ID:
AH09.869
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 20712921 | 20716290 | - | AH09.869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 70,121.54 Da | 50.15 | 92.78 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 2.2E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 3 | 42 | 7.4E-17 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 21 | 543 | 2.94E-31 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 2.4E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 570 | 3.5E-164 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 72.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 378 | 402 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 345 | 377 | 360.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 0.0076 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 284 | 309 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 461 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 487 | 512 | 130.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 627 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 4.71E-276 |
| RefSeq | XP_025824574.1 | transport inhibitor response 1-like protein Os04g0395600 [Panicum hallii] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6B7KXD9 | Auxin signaling F-box protein OS=Echinochloa crus-galli var. zelayensis OX=2053281 GN=AFB2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology