Basic Information
Locus ID:
AH09.862
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 20635141 | 20641995 | - | AH09.862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 83,217.79 Da | 58.09 | 75.49 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 458 | 726 | 7.8E-49 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 226 | 286 | 4.7E-6 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 102 | 160 | 1.5E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 443 | 744 | 2.43E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 532 | 743 | 1.7E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 418 | 531 | 7.6E-31 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 193 | 288 | 3.1E-12 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 60 | 162 | 7.3E-12 | IPR038408 |
| SMART | SM00220 | serkin_6 | 457 | 731 | 1.4E-33 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 59 | 163 | 13.076208 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 178 | 288 | 13.356824 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 457 | 744 | 38.717987 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 463 | 485 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 575 | 587 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 370 | - | - |
| Coils | Coil | Coil | 480 | 507 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23240.2 | - | 5.43E-76 |
| RefSeq | XP_002447714.2 | cysteine-rich receptor-like protein kinase 25 [Sorghum bicolor] | 9.03E-281 |
| Q9C5S9 | Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1 | 2.24E-74 | |
| TrEMBL | A0A811R2N0 | Cysteine-rich receptor-like protein kinase 25 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS47247 PE=4 SV=1 | 2.55E-286 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH09.862, BH09.855, BH09.856, CH09.928 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G073300 |
| Poaceae | Zea mays | 2 | Zm00001eb421250_P001, Zm00001eb421270_P002 |