Basic Information
Locus ID:
AH09.804
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 19904218 | 19907191 | - | AH09.804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.29 | 68,408.21 Da | 67.22 | 68.18 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 335 | 375 | 2.4E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 53 | 103 | 5.45E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 117 | 234 | 1.05E-10 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 335 | 380 | 8.72E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 63 | 298 | 9.8E-15 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 319 | 380 | 9.6E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 333 | 375 | 10.95451 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 43 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 8.32E-122 |
| RefSeq | XP_025823138.1 | F-box protein At5g50450-like [Panicum hallii] | 1.99E-203 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 8.0E-121 | |
| TrEMBL | A0A2T7CTZ6 | MYND-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G112300 PE=4 SV=1 | 1.46E-205 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology