Basic Information
Locus ID:
AH09.702
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 18486564 | 18497984 | - | AH09.702 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 143,455.95 Da | 52.21 | 76.67 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 328 | 399 | 3.62269E-12 | - |
| CDD | cd00780 | NTF2 | 25 | 144 | 1.72972E-37 | IPR018222 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 328 | 386 | 1.6E-10 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 27 | 143 | 1.9E-24 | IPR002075 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 315 | 431 | 6.85E-19 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 23 | 144 | 3.62E-31 | IPR032710 |
| Gene3D | G3DSA:3.30.70.330 | - | 284 | 421 | 7.2E-15 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 19 | 146 | 2.0E-32 | - |
| SMART | SM00360 | rrm1_1 | 327 | 399 | 2.1E-13 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 326 | 403 | 11.195903 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 27 | 143 | 27.439337 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 822 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 807 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 941 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1313 | 1340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 724 | - | - |
| Coils | Coil | Coil | 704 | 724 | - | - |
| Coils | Coil | Coil | 1118 | 1145 | - | - |
| Coils | Coil | Coil | 1062 | 1082 | - | - |
| Coils | Coil | Coil | 1167 | 1236 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 8.4E-83 |
| RefSeq | XP_025823500.1 | ras GTPase-activating protein-binding protein 1-like [Panicum hallii] | 7.77E-243 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 8.12E-82 | |
| TrEMBL | A0A3L6PUM4 | G3BP-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM16G05300 PE=4 SV=1 | 6.02E-242 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology