Basic Information
Locus ID:
AH09.398
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 10384014 | 10395534 | - | AH09.398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 33,577.54 Da | 38.45 | 92.47 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 9 | 152 | 1.14491E-42 | IPR044744 |
| Pfam | PF17123 | RING-like zinc finger | 228 | 249 | 2.0E-6 | IPR001841 |
| Pfam | PF02225 | PA domain | 76 | 139 | 7.1E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 146 | 1.2E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 249 | 7.06E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 293 | 1.6E-6 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 20 | 158 | 1.4E-27 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 1.3E-44 |
| RefSeq | XP_004975098.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Setaria italica] | 3.48E-160 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 2.08E-43 | |
| TrEMBL | K3Y968 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101758717 PE=4 SV=1 | 7.87E-159 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology