Basic Information
Locus ID:
AH09.397
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 10293520 | 10312714 | + | AH09.397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 365,213.31 Da | 44.65 | 87.58 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1448 | 1864 | 1.45657E-119 | IPR000569 |
| CDD | cd01647 | RT_LTR | 2465 | 2643 | 3.233E-65 | - |
| CDD | cd09279 | RNase_HI_like | 2818 | 2942 | 3.65921E-32 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2484 | 2642 | 4.1E-17 | IPR000477 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1496 | 1869 | 1.6E-80 | IPR000569 |
| Pfam | PF13456 | Reverse transcriptase-like | 2822 | 2939 | 2.5E-15 | IPR002156 |
| Pfam | PF00098 | Zinc knuckle | 2144 | 2160 | 3.4E-6 | IPR001878 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2816 | 2936 | 1.77E-14 | IPR012337 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1440 | 1862 | 2.49E-95 | IPR035983 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 3110 | 3182 | 1.69E-5 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2425 | 2783 | 6.56E-94 | IPR043502 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 2134 | 2166 | 2.93E-6 | IPR036875 |
| SUPERFAMILY | SSF48371 | ARM repeat | 180 | 636 | 1.26E-37 | IPR016024 |
| Gene3D | G3DSA:3.30.420.10 | - | 3107 | 3155 | 7.1E-7 | IPR036397 |
| Gene3D | G3DSA:1.10.340.70 | - | 3001 | 3093 | 8.3E-10 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1746 | 1867 | 1.2E-31 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 2819 | 2952 | 7.8E-23 | IPR036397 |
| Gene3D | G3DSA:1.25.10.10 | - | 165 | 472 | 2.9E-50 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1389 | 1634 | 1.8E-43 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 2508 | 2643 | 1.8E-54 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 2426 | 2568 | 1.8E-54 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 2653 | 2735 | 3.3E-16 | IPR043128 |
| SMART | SM00119 | hect_3 | 1462 | 1869 | 5.3E-85 | IPR000569 |
| SMART | SM00343 | c2hcfinal6 | 2144 | 2160 | 8.8E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 2145 | 2160 | 10.410928 | IPR001878 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1472 | 1869 | 57.203388 | IPR000569 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 2814 | 2942 | 12.14284 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1062 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1065 | - | - |
| Coils | Coil | Coil | 2896 | 2916 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_012703143.1 | E3 ubiquitin-protein ligase UPL3 [Setaria italica] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | K3Y4M6 | HECT-type E3 ubiquitin transferase OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology