Basic Information
Locus ID:
AH09.32
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 545280 | 548236 | + | AH09.32 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 53,610.98 Da | 63.08 | 80.24 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 234 | 282 | 2.63232E-16 | - |
| Pfam | PF12906 | RING-variant domain | 234 | 281 | 6.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 284 | 2.12E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 289 | 2.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 233 | 282 | 5.3E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 226 | 288 | 19.340805 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 1.47E-99 |
| RefSeq | XP_025824979.1 | probable E3 ubiquitin-protein ligase MARCH10 isoform X1 [Panicum hallii] | 5.56E-256 |
| TrEMBL | A0A2S3I4Y6 | RING-CH-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_7G006800 PE=4 SV=1 | 1.26E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology