Basic Information
Locus ID:
AH09.2817
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 38559837 | 38563164 | + | AH09.2817 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.96 | 31,310.66 Da | 72.99 | 57.70 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 159 | 217 | 8.92842E-34 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 167 | 214 | 1.7E-22 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 159 | 220 | 1.02E-24 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 170 | 224 | 3.1E-20 | IPR036879 |
| SMART | SM00432 | madsneu2 | 158 | 217 | 2.3E-32 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 158 | 218 | 28.454802 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 180 | 195 | 1.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 195 | 216 | 1.1E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 160 | 180 | 1.1E-25 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 46 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69120.2 | - | 1.88E-19 |
| RefSeq | XP_022681969.1 | MADS-box transcription factor 30 [Setaria italica] | 2.51E-27 |
| A2Y9P0 | MADS-box transcription factor 5 OS=Oryza sativa subsp. indica OX=39946 GN=MADS5 PE=2 SV=1 | 1.13E-19 | |
| TrEMBL | A0A368QYM7 | MADS-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_4G268200v2 PE=4 SV=1 | 4.88E-25 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||