Basic Information
Locus ID:
AH09.2812
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 38513651 | 38519408 | + | AH09.2812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.57 | 113,081.81 Da | 71.66 | 75.81 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 556 | 704 | 1.87435E-51 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 775 | 817 | 5.32151E-22 | - |
| Pfam | PF13639 | Ring finger domain | 774 | 817 | 7.2E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 622 | 683 | 1.7E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 623 | 686 | 8.5E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 755 | 822 | 1.45E-18 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 560 | 697 | 7.9E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 735 | 822 | 4.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 775 | 816 | 1.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 775 | 817 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 855 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 1.54E-124 |
| RefSeq | XP_025823052.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Panicum hallii] | 6.73E-297 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 4.73E-238 | |
| TrEMBL | A0A8T0QSB7 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG361100 PE=4 SV=1 | 1.85E-296 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology