halophFGD

Basic Information

Locus ID: AH09.2712

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Elongation factor Tu C-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH09	37761584	37776254	-	AH09.2712

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.26	197,800.30 Da	50.27	79.52	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01883	EF1_alpha	253	473	4.87535E-112	-
CDD	cd16267	HBS1-like_II	480	564	1.09449E-24	-
CDD	cd04093	HBS1_C_III	568	669	1.25459E-34	-
CDD	cd00200	WD40	904	1156	7.98989E-65	-
Pfam	PF00400	WD domain, G-beta repeat	904	937	0.11	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	986	1022	7.1E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	945	980	9.4E-4	IPR001680
Pfam	PF13925	con80 domain of Katanin	1649	1804	1.5E-47	IPR028021
Pfam	PF00009	Elongation factor Tu GTP binding domain	251	446	2.0E-42	IPR000795
Pfam	PF00400	WD domain, G-beta repeat	1068	1106	1.1E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	1027	1064	1.0E-11	IPR001680
Pfam	PF03143	Elongation factor Tu C-terminal domain	570	669	2.2E-10	IPR004160
SUPERFAMILY	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	574	669	1.17E-20	IPR009001
SUPERFAMILY	SSF50447	Translation proteins	472	567	6.45E-17	IPR009000
SUPERFAMILY	SSF50978	WD40 repeat-like	904	1183	1.31E-70	IPR036322
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	248	489	2.46E-58	IPR027417
Gene3D	G3DSA:2.130.10.10	-	891	1033	6.4E-34	IPR015943
Gene3D	G3DSA:2.40.30.10	Translation factors	568	673	4.7E-27	-
Gene3D	G3DSA:2.40.30.10	Translation factors	478	567	3.2E-21	-
Gene3D	G3DSA:3.40.50.300	-	226	471	2.7E-78	IPR027417
Gene3D	G3DSA:2.130.10.10	-	1034	1184	3.9E-37	IPR015943
SMART	SM00320	WD40_4	1067	1106	5.7E-11	IPR001680
SMART	SM00320	WD40_4	941	980	2.5E-5	IPR001680
SMART	SM00320	WD40_4	983	1022	6.2E-10	IPR001680
SMART	SM00320	WD40_4	1109	1147	16.0	IPR001680
SMART	SM00320	WD40_4	898	938	0.0056	IPR001680
SMART	SM00320	WD40_4	1025	1064	2.1E-13	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1074	1109	12.156496	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	990	1024	11.89286	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	948	989	15.120162	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	990	1031	15.554599	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1032	1069	14.371031	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	905	937	8.57106	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1032	1073	18.69591	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	905	947	10.541869	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	948	982	11.260138	-
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	249	481	51.234886	IPR000795
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1074	1115	15.287253	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	1051	1065	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	1093	1107	-	IPR019775
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	18	37	-	IPR001876
PRINTS	PR00315	GTP-binding elongation factor signature	348	359	1.2E-17	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	253	266	1.2E-17	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	332	342	1.2E-17	IPR000795
PRINTS	PR00320	G protein beta WD-40 repeat signature	1051	1065	4.3E-7	IPR020472
PRINTS	PR00315	GTP-binding elongation factor signature	394	403	1.2E-17	IPR000795
PRINTS	PR00320	G protein beta WD-40 repeat signature	1093	1107	4.3E-7	IPR020472
PRINTS	PR00315	GTP-binding elongation factor signature	312	320	1.2E-17	IPR000795
PRINTS	PR00320	G protein beta WD-40 repeat signature	1009	1023	4.3E-7	IPR020472
Hamap	MF_03022	Katanin p80 WD40 repeat-containing subunit B1 [KATNB1].	894	1809	20.644684	IPR026962
MobiDBLite	mobidb-lite	consensus disorder prediction	1590	1636	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	177	204	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	852	868	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1209	1289	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1333	1484	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1357	1371	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	801	885	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	812	837	-	-

Gene Ontology

Biological Process:

GO:0051013 (microtubule severing)

Molecular Function:

GO:0003924 (GTPase activity) GO:0005515 (protein binding) GO:0005525 (GTP binding) GO:0008017 (microtubule binding)

Cellular Component:

GO:0008352 (katanin complex)

KEGG Pathway

KO Term:

K14416 (elongation factor 1 alpha-like protein)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G10630.3	-	4.33E-199
RefSeq	XP_004960066.1	HBS1-like protein isoform X1 [Setaria italica]	0
Swiss-Prot	Q2KHZ2	HBS1-like protein OS=Bos taurus OX=9913 GN=HBS1L PE=2 SV=1	6.91E-102
TrEMBL	A0A3L6FQC7	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Zea mays OX=4577 GN=At5g23430_3 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg20304, jg22035, jg5079
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22289, gene_25334
Amaranthaceae	Atriplex hortensis	4	Ah017931, Ah024700, Ah038645, Ah038646
Amaranthaceae	Beta vulgaris	1	BVRB_9g202260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10176, Sbi_jg14659, Sbi_jg26388, Sbi_jg55416
Amaranthaceae	Salicornia europaea	2	Seu_jg22253, Seu_jg25981
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00014013, GOSA_00023970
Amaranthaceae	Suaeda glauca	6	Sgl45799, Sgl45800, Sgl45839, Sgl50534, Sgl78017, Sgl80522
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000009427, gene:ENSEOMG00000011078 ... gene:ENSEOMG00000027532, gene:ENSEOMG00000031772, gene:ENSEOMG00000035988, gene:ENSEOMG00000041313, gene:ENSEOMG00000044088
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0005330, CQ.Regalona.r1.4AG0017400 ... CQ.Regalona.r1.4BG0017810, CQ.Regalona.r1.8AG0004330, CQ.Regalona.r1.8BG0004650
Anacardiaceae	Pistacia vera	2	pistato.v30092450, pistato.v30212810
Apiaceae	Apium graveolens	2	Ag5G01879, Ag8G01941
Arecaceae	Cocos nucifera	4	COCNU_08G009940, COCNU_09G006950, COCNU_14G006400 ... scaffold000040G000080
Arecaceae	Phoenix dactylifera	4	gene-LOC103696578, gene-LOC103698051, gene-LOC103714616 ... gene-LOC103716371
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2222.V1.1, AsparagusV1_07.2138.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G03933, Ftri15G01385, Ftri5G14987
Brassicaceae	Arabidopsis thaliana	4	AT1G11160.1, AT1G61210.1, AT5G08390.1, AT5G23430.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005394m.g.v1.0, Thhalv10006699m.g.v1.0 ... Thhalv10012683m.g.v1.0, Thhalv10023227m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g09830.v2.2, Sp2g03270.v2.2, Sp2g23730.v2.2 ... Sp6g34550.v2.2
Brassicaceae	Brassica nigra	5	BniB02g006050.2N, BniB02g076620.2N, BniB07g040740.2N ... BniB07g047230.2N, BniB08g003770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2447, Ceq03G1985
Casuarinaceae	Casuarina glauca	2	Cgl01G2704, Cgl03G2131
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g00050, gene.Cymno14g02460
Dunaliellaceae	Dunaliella salina	1	Dusal.0028s00016.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g12440, gene.Thate05g28660, gene.Thate07g10040 ... gene.Thate08g00910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11052, nbisL1-mrna-3850, nbisL1-mrna-9404
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1584, evm.TU.LG12.1006
Plantaginaceae	Plantago ovata	2	Pov_00005719, Pov_00027678
Plumbaginaceae	Limonium bicolor	5	Lb2G15301, Lb3G20755, Lb4G24638, Lb4G24640, Lb6G30412
Poaceae	Echinochloa crus-galli	10	AH01.1718, AH02.3487, AH09.2712, BH01.1919, BH02.3470 ... BH02.3505, BH09.2952, CH01.2180, CH02.3010, CH09.3250
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0035730, gene-QOZ80_1BG0085760 ... gene-QOZ80_2AG0112260, gene-QOZ80_4AG0299350, gene-QOZ80_4BG0330040
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0045950.1, HORVU.MOREX.r3.2HG0209810.1 ... HORVU.MOREX.r3.3HG0293550.1
Poaceae	Lolium multiflorum	3	gene-QYE76_011771, gene-QYE76_047525, gene-QYE76_056127
Poaceae	Oryza coarctata	6	Oco01G021880, Oco02G022450, Oco07G019300, Oco08G018570 ... Oco19G006970, Oco20G006920
Poaceae	Oryza sativa	4	LOC_Os01g34680.1, LOC_Os01g57210.1, LOC_Os04g58130.1 ... LOC_Os10g35200.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G189600, gene-BS78_03G296900 ... gene-BS78_06G284100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300098, Pt_Chr0300135, Pt_Chr0502734, Pt_Chr0502789 ... Pt_Chr0601626
Poaceae	Sporobolus alterniflorus	9	Chr02G007960, Chr03G017620, Chr05G025550, Chr08G024140 ... Chr15G021670, Chr23G000850, Chr25G000650, Chr26G018430, Chr30G000690
Poaceae	Thinopyrum elongatum	3	Tel1E01G300100, Tel2E01G962200, Tel3E01G512000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG025210, gene_TRIDC1BG030250 ... gene_TRIDC2AG077500, gene_TRIDC2BG085680, gene_TRIDC3AG046170, gene_TRIDC3BG052490
Poaceae	Triticum aestivum	10	TraesCS1A02G164300.1, TraesCS1B02G181100.1 ... TraesCS1D02G151100.1, TraesCS1D02G161300.1, TraesCS2A02G592600.1, TraesCS2B02G591600.2, TraesCS2D02G561900.1, TraesCS3A02G317500.1, TraesCS3B02G349000.2, TraesCS3D02G313800.1
Poaceae	Zea mays	5	Zm00001eb044790_P002, Zm00001eb066150_P001 ... Zm00001eb283500_P001, Zm00001eb369860_P004, Zm00001eb433770_P001
Poaceae	Zoysia japonica	3	nbis-gene-11745, nbis-gene-23209, nbis-gene-6199
Poaceae	Zoysia macrostachya	4	Zma_g11280, Zma_g20696, Zma_g22228, Zma_g8778
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1606, evm.TU.LG01.1668, evm.TU.LG02.2342 ... evm.TU.LG14.854, evm.TU.LG14.894, evm.TU.LG23.577
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04090, gene.Posoc10g00150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60431.1, evm.TU.60432.1, evm.TU.Scaffold_15_RagTag.2
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23809, nbisL1-mrna-26286
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12115, nbisL1-mrna-9155
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17357, nbisL1-mrna-21620
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.1, evm.TU.utg000027l.100
Rhizophoraceae	Kandelia obovata	2	Maker00004589, Maker00017476
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10653, nbisL1-mrna-11719
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23919, nbisL1-mrna-2922
Salicaceae	Populus euphratica	3	populus_peu05933, populus_peu18245, populus_peu19797
Solanaceae	Lycium barbarum	3	gene-LOC132613553, gene-LOC132621242, gene-LOC132621419
Solanaceae	Solanum chilense	3	SOLCI001186500, SOLCI004632600, SOLCI006635800
Solanaceae	Solanum pennellii	3	gene-LOC107011271, gene-LOC107011518, gene-LOC107015576
Tamaricaceae	Reaumuria soongarica	2	STRG.8204_chr05_-, gene_16689
Tamaricaceae	Tamarix chinensis	2	TC01G2388, TC07G1248
Zosteraceae	Zostera marina	2	Zosma01g35090.v3.1, Zosma03g28400.v3.1