Basic Information
Locus ID:
AH09.2382
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 34960609 | 34972894 | - | AH09.2382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.39 | 123,990.85 Da | 48.33 | 77.74 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 933 | 1075 | 2.46219E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 379 | 730 | 8.94811E-82 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 968 | 1065 | 1.5E-11 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 845 | 889 | 1.3E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 393 | 807 | 2.2E-64 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 738 | 1122 | 5.06E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 844 | 897 | 2.42E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 337 | 730 | 6.92E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 615 | 731 | 4.5E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 745 | 1122 | 3.7E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 350 | 443 | 6.4E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 504 | 603 | 9.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 828 | 897 | 2.8E-11 | IPR013083 |
| SMART | SM00490 | helicmild6 | 982 | 1065 | 3.3E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 375 | 707 | 1.1E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 846 | 884 | 0.0013 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 961 | 1118 | 13.98953 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 520 | 692 | 12.665661 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 846 | 882 | 10.895954 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 861 | 870 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 510 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 2.54E-261 |
| RefSeq | XP_039819696.1 | helicase-like transcription factor CHR28 [Panicum virgatum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 2.44E-260 | |
| TrEMBL | A0A3L6PXE4 | Putative ATP-dependent helicase C17A2.12-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G20830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology