Basic Information
Locus ID:
AH09.2379
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 34941891 | 34946763 | - | AH09.2379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 72,542.06 Da | 56.97 | 90.76 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 488 | 627 | 4.26894E-48 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 174 | 417 | 1.01744E-84 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 517 | 616 | 1.7E-17 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 194 | 452 | 2.2E-56 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 323 | 641 | 8.29E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 162 | 417 | 4.66E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 432 | 643 | 8.3E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 144 | 430 | 6.5E-56 | IPR038718 |
| SMART | SM00490 | helicmild6 | 533 | 616 | 3.4E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 170 | 394 | 2.3E-26 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 507 | 645 | 15.577958 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 188 | 379 | 16.438101 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 5.24E-108 |
| RefSeq | XP_006659184.1 | helicase-like transcription factor CHR28 [Oryza brachyantha] | 8.33E-131 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 2.54E-104 | |
| TrEMBL | A0A811QTP4 | DNA repair and recombination protein RAD26-like OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS42926 PE=4 SV=1 | 3.31E-203 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology