Basic Information
Locus ID:
AH09.2178
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 33026579 | 33028416 | + | AH09.2178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 51,886.65 Da | 51.22 | 74.82 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 175 | 447 | 1.94643E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 192 | 249 | 7.1E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 362 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 447 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 308 | 8.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 167 | 447 | 3.66E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 101 | 450 | 2.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 320 | 362 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 224 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 265 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 447 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 3.6E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 229 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 317 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 233 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 415 | 448 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 415 | 448 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 310 | 11.154684 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 434 | 448 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 295 | 309 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 1.59E-234 |
| RefSeq | XP_034603811.1 | cell division cycle 20.2, cofactor of APC complex-like [Setaria viridis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 1.52E-233 | |
| TrEMBL | A0A4U6TTG0 | ANAPC4_WD40 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G235000v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology