halophFGD

Basic Information

Locus ID: AH09.2137

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH09	32735180	32736628	+	AH09.2137

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.48	53,401.45 Da	51.55	84.75	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	246	329	2.6E-5	IPR013187
SUPERFAMILY	SSF81383	F-box domain	10	65	2.22E-5	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	117	339	4.3E-14	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_052166426.1	uncharacterized protein LOC127783231 [Oryza glaberrima]	7.95E-79
TrEMBL	A0A835ERP6	FBA_3 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_033043 PE=4 SV=1	1.3E-155

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	19	AH01.3106, AH01.368, AH09.2135, AH09.2136, AH09.2137 ... AH09.2138, BH01.3455, BH09.2298, BH09.2299, BH09.2300, BH09.2301, CH01.203, CH01.204, CH01.205, CH03.3383, CH09.2438, CH09.2439, CH09.2440, CH09.2441
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_2AG0114730, gene-QOZ80_2BG0156030 ... gene-QOZ80_3AG0210640, gene-QOZ80_3AG0210690, gene-QOZ80_3BG0255740, gene-QOZ80_3BG0255860, gene-QOZ80_4AG0305690, gene-QOZ80_4AG0305710, gene-QOZ80_4AG0305720, gene-QOZ80_4AG0305730, gene-QOZ80_4AG0305740, gene-QOZ80_4AG0305750, gene-QOZ80_4BG0336650, gene-QOZ80_4BG0336680
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0432080.1.CDS1 ... HORVU.MOREX.r3.5HG0432100.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_019545, gene-QYE76_021068, gene-QYE76_024580
Poaceae	Oryza coarctata	5	Oco07G014550, Oco08G014010, Oco15G012000, Oco16G009760 ... Oco16G010590
Poaceae	Oryza sativa	6	LOC_Os04g50200.1, LOC_Os08g36960.1, LOC_Os08g38330.1 ... LOC_Os08g38350.1, LOC_Os08g38360.1, LOC_Os12g42000.1
Poaceae	Paspalum vaginatum	1	gene-BS78_05G098500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0100980, Pt_Chr0600001
Poaceae	Sporobolus alterniflorus	1	Chr06G028970
Poaceae	Thinopyrum elongatum	1	Tel2E01G675200
Poaceae	Triticum aestivum	2	TraesCS2D02G570200.1.cds1, TraesCSU02G090300.1.cds1