Basic Information
Locus ID:
AH09.2101
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 32440994 | 32442610 | + | AH09.2101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 58,845.27 Da | 49.69 | 87.03 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 48 | 203 | 1.43869E-20 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 7.8E-97 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 360 | 419 | 7.5E-10 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 84 | 118 | 7.6E-6 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 204 | 355 | 9.16E-55 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 359 | 490 | 2.55E-28 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 12 | 202 | 1.96E-42 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 359 | 480 | 6.0E-21 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 344 | 1.8E-134 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 41 | 197 | 1.8E-134 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 536 | 4.4E-176 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 525 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 8.96E-182 |
| RefSeq | XP_012702940.2 | nuclear poly(A) polymerase 4 [Setaria italica] | 8.4400000000015E-312 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 1.89E-180 | |
| TrEMBL | A0A3L6QC85 | Poly(A) polymerase OS=Panicum miliaceum OX=4540 GN=C2845_PM15G19920 PE=3 SV=1 | 1.2099999999909E-314 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology