Basic Information
Locus ID:
AH09.2041
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 31956275 | 31956808 | - | AH09.2041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 18,205.50 Da | 47.43 | 83.50 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 108 | 155 | 3.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 160 | 1.98E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 159 | 2.4E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 154 | 2.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 155 | 12.135206 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004976587.1 | uncharacterized protein LOC101763053 [Setaria italica] | 5.18E-76 |
| TrEMBL | K3YDZ7 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 1.84E-75 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32340 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2041, BH09.2198, CH09.2347 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306430, gene-QOZ80_4BG0337430 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045732, gene-QYE76_064127 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G197400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703590, Pt_Chr0703595 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G004870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G677900 |
| Poaceae | Triticum aestivum | 2 | TraesCS2B02G413100.1.cds1, TraesCS2D02G392600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb073040_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5640 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21839 |