Basic Information
Locus ID:
AH09.2028
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
BRH1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 31872027 | 31872659 | - | AH09.2028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 22,795.04 Da | 51.57 | 103.19 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 113 | 156 | 4.25344E-14 | - |
| Pfam | PF13639 | Ring finger domain | 112 | 156 | 8.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 162 | 7.07E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 160 | 6.1E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 112 | 156 | 0.0042 | IPR011016 |
| SMART | SM00184 | ring_2 | 113 | 155 | 7.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 156 | 12.282736 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 1.46E-39 |
| RefSeq | XP_039773644.1 | brassinosteroid-responsive RING protein 1-like [Panicum virgatum] | 5.81E-139 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 1.41E-38 | |
| TrEMBL | A0A8T0QKS8 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG311100 PE=4 SV=1 | 1.31E-137 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology