halophFGD

Basic Information

Locus ID: AH09.1672

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: catalytic domain of ctd-like phosphatases

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH09	28519825	28539018	+	AH09.1672

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.70	232,833.20 Da	62.12	71.47	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	660	979	4.17271E-43	-
Pfam	PF03031	NLI interacting factor-like phosphatase	1455	1565	2.5E-6	IPR004274
Pfam	PF00400	WD domain, G-beta repeat	807	844	0.0016	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	940	978	0.21	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	662	693	2.8E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	766	801	2.2E-6	IPR001680
SUPERFAMILY	SSF54768	dsRNA-binding domain-like	2003	2074	1.05E-12	-
SUPERFAMILY	SSF56784	HAD-like	1332	1589	2.51E-19	IPR036412
SUPERFAMILY	SSF50978	WD40 repeat-like	658	990	5.31E-56	IPR036322
Gene3D	G3DSA:3.30.160.20	-	1999	2070	2.9E-7	-
Gene3D	G3DSA:2.130.10.10	-	654	1020	3.2E-62	IPR015943
Gene3D	G3DSA:3.40.50.1000	-	1332	1597	5.3E-25	IPR023214
SMART	SM00320	WD40_4	764	802	1.1E-9	IPR001680
SMART	SM00320	WD40_4	655	694	1.7E-8	IPR001680
SMART	SM00320	WD40_4	805	844	1.5E-9	IPR001680
SMART	SM00320	WD40_4	847	885	3.7	IPR001680
SMART	SM00320	WD40_4	901	937	28.0	IPR001680
SMART	SM00577	forpap2	1399	1574	1.3E-10	IPR004274
SMART	SM00320	WD40_4	938	979	0.26	IPR001680
SMART	SM00358	DRBM_3	2000	2066	6.4E-5	IPR014720
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	662	703	15.019908	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	771	811	13.282162	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	662	696	12.024679	-
ProSiteProfiles	PS50137	Double stranded RNA-binding domain (dsRBD) profile.	1999	2067	9.610579	IPR014720
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	811	853	12.680634	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	771	805	9.968326	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	811	847	10.390142	-
ProSiteProfiles	PS50969	FCP1 homology domain profile.	1338	1590	16.576342	IPR004274
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	681	695	-	IPR019775
MobiDBLite	mobidb-lite	consensus disorder prediction	601	622	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1720	1744	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1863	1882	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	270	304	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	380	395	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	325	398	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	274	288	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2076	2095	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	554	600	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	205	235	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	445	499	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	554	638	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K18998 (RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16])

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G21670.1	C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.	6.91E-252
RefSeq	XP_039774792.1	RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Panicum virgatum]	0
Swiss-Prot	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1	6.65E-251
TrEMBL	A0A8T0QJ95	protein-serine/threonine phosphatase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG258800 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14788, jg22012, jg24860, jg3273, jg38105
Aizoaceae	Mesembryanthemum crystallinum	3	gene_22276, gene_354, gene_9658
Amaranthaceae	Atriplex hortensis	2	Ah015945, Ah017984
Amaranthaceae	Beta vulgaris	2	BVRB_8g183610, BVRB_8g188610
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10013, Sbi_jg26245, Sbi_jg40684, Sbi_jg50687
Amaranthaceae	Salicornia europaea	2	Seu_jg22346, Seu_jg2245
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00027923, GOSA_00028552, GOSA_00028553
Amaranthaceae	Suaeda glauca	6	Sgl44592, Sgl44593, Sgl45888, Sgl49356, Sgl49357, Sgl50588
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010554, gene:ENSEOMG00000032713 ... gene:ENSEOMG00000033299, gene:ENSEOMG00000034164, gene:ENSEOMG00000046381, gene:ENSEOMG00000046577
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.8AG0004830, CQ.Regalona.r1.8BG0005010 ... CQ.Regalona.r1.8BG0012230
Anacardiaceae	Pistacia vera	2	pistato.v30073460, pistato.v30285750
Apiaceae	Apium graveolens	3	Ag8G00098, Ag8G00934, AgUnG00784
Arecaceae	Cocos nucifera	3	COCNU_04G000320, COCNU_07G012690, scaffold012427G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103696097, gene-LOC103704029, gene-LOC103721113 ... gene-LOC120108727
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.3328.V1.1, AsparagusV1_07.2126.V1.1 ... AsparagusV1_07.27.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G12721, Ftri15G02983, Ftri9G00191
Brassicaceae	Arabidopsis thaliana	2	AT4G21670.1, AT5G01270.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10012754m.g.v1.0, Thhalv10024324m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g40600.v2.2, Sp7g19780.v2.2
Brassicaceae	Brassica nigra	3	BniB02g070650.2N, BniB05g015470.2N, BniB08g000370.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1891, Ceq01G2319, Ceq08G1034
Casuarinaceae	Casuarina glauca	3	Cgl01G2061, Cgl01G2632, Cgl08G1056
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g15770, gene.Cymno10g01700
Dunaliellaceae	Dunaliella salina	3	Dusal.0216s00008.v1.0, Dusal.0232s00003.v1.0 ... Dusal.0232s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate05g18050, gene.Thate06g00030
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8650
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1039, evm.TU.LG12.983
Plantaginaceae	Plantago ovata	3	Pov_00005754, Pov_00006498, Pov_00033369
Plumbaginaceae	Limonium bicolor	3	Lb2G10061, Lb2G10066, Lb4G24654
Poaceae	Echinochloa crus-galli	7	AH02.3934, AH07.2762, AH09.1672, BH02.3955, BH07.4266 ... BH09.1858, CH07.2632
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0040470, gene-QOZ80_1BG0090510 ... gene-QOZ80_2AG0138720, gene-QOZ80_2BG0194390, gene-QOZ80_4AG0309680, gene-QOZ80_4BG0340870
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0183720.1, HORVU.MOREX.r3.3HG0300980.1 ... HORVU.MOREX.r3.6HG0598130.1
Poaceae	Lolium multiflorum	8	gene-QYE76_006892, gene-QYE76_023920, gene-QYE76_042995 ... gene-QYE76_043998, gene-QYE76_056485, gene-QYE76_058753, gene-QYE76_058756, gene-QYE76_058760
Poaceae	Oryza coarctata	6	Oco01G025310, Oco02G026230, Oco03G016320, Oco04G017050 ... Oco07G011260, Oco08G011000
Poaceae	Oryza sativa	3	LOC_Os01g63820.1, LOC_Os02g42600.1, LOC_Os04g44710.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G342100, gene-BS78_04G207700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0204063, Pt_Chr0207543, Pt_Chr0301973, Pt_Chr0601419 ... Pt_Chr0601476
Poaceae	Sporobolus alterniflorus	10	Chr02G004160, Chr03G020380, Chr05G029180, Chr06G006640 ... Chr09G025060, Chr0G033910, Chr13G006520, Chr15G008330, Chr25G006700, Chr30G006600
Poaceae	Thinopyrum elongatum	3	Tel2E01G644000, Tel3E01G588700, Tel6E01G448200
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG054020, gene_TRIDC2BG056750 ... gene_TRIDC3AG053190, gene_TRIDC3BG059880, gene_TRIDC6AG036300, gene_TRIDC6BG043160
Poaceae	Triticum aestivum	9	TraesCS2A02G373400.3, TraesCS2B02G390500.3 ... TraesCS2D02G369600.4, TraesCS3A02G370000.2, TraesCS3B02G401900.2, TraesCS3D02G362900.4, TraesCS6A02G235300.4, TraesCS6B02G264000.3, TraesCS6D02G218000.3
Poaceae	Zea mays	3	Zm00001eb147420_P003, Zm00001eb185700_P004 ... Zm00001eb248450_P001
Poaceae	Zoysia japonica	3	nbis-gene-11333, nbis-gene-28682, nbis-gene-9368
Poaceae	Zoysia macrostachya	4	Zma_g13975, Zma_g16738, Zma_g20099, Zma_g9035
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1614, evm.TU.LG04.2579, evm.TU.LG08.36 ... evm.TU.LG14.862, evm.TU.LG14.863, evm.TU.LG18.1834, evm.TU.LG20.72
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04240, gene.Posoc07g16020
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.218, evm.TU.Scaffold_1_RagTag.1795
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-29497, nbisL1-mrna-5588
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1401, nbisL1-mrna-2403
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20897, nbisL1-mrna-3713
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.130, evm.TU.utg000016l.683
Rhizophoraceae	Kandelia obovata	2	Maker00015227, Maker00016371
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4969, nbisL1-mrna-5968
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-13748, nbisL1-mrna-16903
Salicaceae	Populus euphratica	3	populus_peu10094, populus_peu18213, populus_peu25493
Solanaceae	Lycium barbarum	2	gene-LOC132624965, gene-LOC132630746
Solanaceae	Solanum chilense	1	SOLCI005664000
Solanaceae	Solanum pennellii	2	gene-LOC107011010, gene-LOC107031121
Tamaricaceae	Reaumuria soongarica	3	STRG.17879_chr09_+, STRG.26815_chr04_+, gene_6869
Tamaricaceae	Tamarix chinensis	2	TC07G0299, TC07G1270
Zosteraceae	Zostera marina	2	Zosma03g28450.v3.1, Zosma06g27640.v3.1