Basic Information
Locus ID:
AH09.1387
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 25828467 | 25828973 | + | AH09.1387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.36 | 19,551.75 Da | 93.85 | 78.33 | -0.34 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025825349.1 | E3 ubiquitin-protein ligase RNF149-like [Panicum hallii] | 1.3E-63 |
| TrEMBL | A0A811QVV4 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS43872 PE=4 SV=1 | 6.0E-65 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH09.1386, AH09.1387, AH09.1454, BH09.1568, BH09.1569 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0311420, gene-QOZ80_4AG0312750 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G009150 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g41050.1, LOC_Os04g41070.1, LOC_Os04g41080.1 |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G337600, gene-BS78_03G158300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010060, Chr25G009600, Chr30G009440 |
| Poaceae | Zea mays | 8 | Zm00001eb078920_P001, Zm00001eb078930_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36940 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19953 |