Basic Information
Locus ID:
AH09.1354
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 25528160 | 25530431 | - | AH09.1354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 56,712.50 Da | 47.41 | 97.71 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 60 | 8.4E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 177 | 320 | 2.59E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 73 | 4.84E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 160 | 380 | 3.6E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 70 | 10.133335 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052150856.1 | F-box/FBD/LRR-repeat protein At5g53840-like [Oryza glaberrima] | 4.32E-105 |
| TrEMBL | K3YEL1 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_7G143200v2 PE=4 SV=1 | 6.32E-206 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH09.1354 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G454500, gene-BS78_06G136700, gene-BS78_K067800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307229 |