Basic Information
Locus ID:
AH09.116
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 2011752 | 2012435 | - | AH09.116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.67 | 25,895.55 Da | 53.89 | 69.08 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 13 | 57 | 1.1E-4 | IPR001574 |
| Pfam | PF00161 | Ribosome inactivating protein | 135 | 197 | 9.2E-15 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 142 | 216 | 2.75E-13 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 160 | 221 | 1.3E-24 | IPR016139 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772178.1 | ribosome-inactivating protein-like [Panicum virgatum] | 4.47E-52 |
| P10593 | Albumin b-32 OS=Zea mays OX=4577 GN=O6 PE=2 SV=2 | 2.55E-28 | |
| TrEMBL | A0A8T0QAS1 | rRNA N-glycosylase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG024832 PE=3 SV=1 | 1.01E-50 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology