Basic Information
Locus ID:
AH09.1109
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 23309937 | 23310875 | + | AH09.1109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 31,735.07 Da | 58.23 | 75.19 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 119 | 162 | 7.80351E-23 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 168 | 1.06E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 169 | 2.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 2.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 312 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 3.21E-24 |
| RefSeq | XP_025823082.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 9.97E-94 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 6.09E-29 | |
| TrEMBL | A0A1E5VJJ9 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013684 PE=4 SV=1 | 2.37E-111 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology