Basic Information
Locus ID:
AH09.1074
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 22941574 | 22951070 | - | AH09.1074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 50,026.43 Da | 55.15 | 105.89 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 66 | 104 | 1.1E-6 | IPR001810 |
| Pfam | PF02532 | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) | 420 | 440 | 4.5E-9 | IPR003686 |
| SUPERFAMILY | SSF161041 | Photosystem II reaction center protein I, PsbI | 418 | 438 | 3.14E-6 | IPR037271 |
| SUPERFAMILY | SSF52047 | RNI-like | 170 | 397 | 4.71E-15 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 64 | 115 | 1.83E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 121 | 423 | 1.6E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 52 | 107 | 7.7E-7 | - |
| SMART | SM00256 | fbox_2 | 69 | 109 | 0.0018 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 63 | 99 | 10.34529 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78760.1 | F-box/RNI-like superfamily protein. | 1.64E-8 |
| RefSeq | XP_022683200.1 | F-box/FBD/LRR-repeat protein At5g22700 isoform X2 [Setaria italica] | 2.38E-76 |
| Q7X7A4 | MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 | 1.07E-22 | |
| TrEMBL | A0A368RP38 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G219100v2 PE=4 SV=1 | 5.39E-75 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology